data_5D48
#
_model_server_result.job_id            Eysl41RT5iTMdQ8zoXfV3w 
_model_server_result.datetime_utc      '2024-11-22 18:27:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d48 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5D48 
#
_exptl.entry_id    5D48 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D48 
_cell.length_a            32.08 
_cell.length_b            53.73 
_cell.length_c            74.74 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D48 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             133 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              112 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            OE2 
_struct_conn.ptnr2_label_comp_id            GLU 
_struct_conn.ptnr2_label_seq_id             150 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             GLU 
_struct_conn.ptnr2_auth_seq_id              129 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.322 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 329 n n 
P O2 PO4 sing 330 n n 
P O3 PO4 sing 331 n n 
P O4 PO4 sing 332 n n 
#
_atom_sites.entry_id                     5D48 
_atom_sites.fract_transf_matrix[1][1]    0.031172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018612 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 L96 A 1 201 1 L96 L96 . 
C 3 PO4 A 1 202 2 PO4 PO4 . 
D 3 PO4 A 1 203 3 PO4 PO4 . 
E 4 HOH A 1 301 57 HOH HOH . 
E 4 HOH A 2 302 109 HOH HOH . 
E 4 HOH A 3 303 13 HOH HOH . 
E 4 HOH A 4 304 44 HOH HOH . 
E 4 HOH A 5 305 51 HOH HOH . 
E 4 HOH A 6 306 7 HOH HOH . 
E 4 HOH A 7 307 93 HOH HOH . 
E 4 HOH A 8 308 43 HOH HOH . 
E 4 HOH A 9 309 31 HOH HOH . 
E 4 HOH A 10 310 52 HOH HOH . 
E 4 HOH A 11 311 38 HOH HOH . 
E 4 HOH A 12 312 35 HOH HOH . 
E 4 HOH A 13 313 39 HOH HOH . 
E 4 HOH A 14 314 21 HOH HOH . 
E 4 HOH A 15 315 20 HOH HOH . 
E 4 HOH A 16 316 17 HOH HOH . 
E 4 HOH A 17 317 95 HOH HOH . 
E 4 HOH A 18 318 14 HOH HOH . 
E 4 HOH A 19 319 104 HOH HOH . 
E 4 HOH A 20 320 66 HOH HOH . 
E 4 HOH A 21 321 102 HOH HOH . 
E 4 HOH A 22 322 29 HOH HOH . 
E 4 HOH A 23 323 91 HOH HOH . 
E 4 HOH A 24 324 28 HOH HOH . 
E 4 HOH A 25 325 98 HOH HOH . 
E 4 HOH A 26 326 56 HOH HOH . 
E 4 HOH A 27 327 10 HOH HOH . 
E 4 HOH A 28 328 90 HOH HOH . 
E 4 HOH A 29 329 5 HOH HOH . 
E 4 HOH A 30 330 49 HOH HOH . 
E 4 HOH A 31 331 18 HOH HOH . 
E 4 HOH A 32 332 77 HOH HOH . 
E 4 HOH A 33 333 32 HOH HOH . 
E 4 HOH A 34 334 79 HOH HOH . 
E 4 HOH A 35 335 6 HOH HOH . 
E 4 HOH A 36 336 23 HOH HOH . 
E 4 HOH A 37 337 11 HOH HOH . 
E 4 HOH A 38 338 50 HOH HOH . 
E 4 HOH A 39 339 85 HOH HOH . 
E 4 HOH A 40 340 40 HOH HOH . 
E 4 HOH A 41 341 30 HOH HOH . 
E 4 HOH A 42 342 19 HOH HOH . 
E 4 HOH A 43 343 1 HOH HOH . 
E 4 HOH A 44 344 34 HOH HOH . 
E 4 HOH A 45 345 27 HOH HOH . 
E 4 HOH A 46 346 24 HOH HOH . 
E 4 HOH A 47 347 41 HOH HOH . 
E 4 HOH A 48 348 88 HOH HOH . 
E 4 HOH A 49 349 9 HOH HOH . 
E 4 HOH A 50 350 47 HOH HOH . 
E 4 HOH A 51 351 36 HOH HOH . 
E 4 HOH A 52 352 73 HOH HOH . 
E 4 HOH A 53 353 82 HOH HOH . 
E 4 HOH A 54 354 89 HOH HOH . 
E 4 HOH A 55 355 12 HOH HOH . 
E 4 HOH A 56 356 15 HOH HOH . 
E 4 HOH A 57 357 42 HOH HOH . 
E 4 HOH A 58 358 54 HOH HOH . 
E 4 HOH A 59 359 108 HOH HOH . 
E 4 HOH A 60 360 16 HOH HOH . 
E 4 HOH A 61 361 86 HOH HOH . 
E 4 HOH A 62 362 97 HOH HOH . 
E 4 HOH A 63 363 26 HOH HOH . 
E 4 HOH A 64 364 87 HOH HOH . 
E 4 HOH A 65 365 2 HOH HOH . 
E 4 HOH A 66 366 103 HOH HOH . 
E 4 HOH A 67 367 99 HOH HOH . 
E 4 HOH A 68 368 25 HOH HOH . 
E 4 HOH A 69 369 33 HOH HOH . 
E 4 HOH A 70 370 78 HOH HOH . 
E 4 HOH A 71 371 67 HOH HOH . 
E 4 HOH A 72 372 101 HOH HOH . 
E 4 HOH A 73 373 96 HOH HOH . 
E 4 HOH A 74 374 22 HOH HOH . 
E 4 HOH A 75 375 8 HOH HOH . 
E 4 HOH A 76 376 65 HOH HOH . 
E 4 HOH A 77 377 100 HOH HOH . 
E 4 HOH A 78 378 81 HOH HOH . 
E 4 HOH A 79 379 46 HOH HOH . 
E 4 HOH A 80 380 80 HOH HOH . 
E 4 HOH A 81 381 63 HOH HOH . 
E 4 HOH A 82 382 110 HOH HOH . 
E 4 HOH A 83 383 62 HOH HOH . 
E 4 HOH A 84 384 84 HOH HOH . 
E 4 HOH A 85 385 111 HOH HOH . 
E 4 HOH A 86 386 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 3 7.622 -4.393 33.616 1 50.1 ? P PO4 203 A 1 
HETATM 2 O O1 PO4 . . . D 3 7.816 -4.568 32.093 1 49.17 ? O1 PO4 203 A 1 
HETATM 3 O O2 PO4 . . . D 3 8.861 -3.763 34.269 1 46.85 ? O2 PO4 203 A 1 
HETATM 4 O O3 PO4 . . . D 3 7.3 -5.787 34.161 1 42.96 ? O3 PO4 203 A 1 
HETATM 5 O O4 PO4 . . . D 3 6.509 -3.422 34.003 1 43.56 ? O4 PO4 203 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#