data_5D4G
#
_model_server_result.job_id            6nboIsK1DLbwafUCfnxLog 
_model_server_result.datetime_utc      '2024-11-21 19:02:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d4g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5D4G 
#
_exptl.entry_id    5D4G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5D4G 
_cell.length_a            73.783 
_cell.length_b            73.783 
_cell.length_c            129.879 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D4G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 61 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 89 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 89 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 100 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 A O ILE 101 A ILE 101 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 D O2P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 D O3P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 D O3P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc11 C MN MN . A MN 202 1_555 E O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc12 C MN MN . A MN 202 1_555 E O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D4G 
_atom_sites.fract_transf_matrix[1][1]    0.013553 
_atom_sites.fract_transf_matrix[1][2]    0.007825 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 U5P A 1 203 1 U5P U5P . 
E 4 HOH A 1 301 9 HOH HOH . 
E 4 HOH A 2 302 1 HOH HOH . 
E 4 HOH A 3 303 35 HOH HOH . 
E 4 HOH A 4 304 19 HOH HOH . 
E 4 HOH A 5 305 10 HOH HOH . 
E 4 HOH A 6 306 45 HOH HOH . 
E 4 HOH A 7 307 48 HOH HOH . 
E 4 HOH A 8 308 11 HOH HOH . 
E 4 HOH A 9 309 32 HOH HOH . 
E 4 HOH A 10 310 14 HOH HOH . 
E 4 HOH A 11 311 36 HOH HOH . 
E 4 HOH A 12 312 37 HOH HOH . 
E 4 HOH A 13 313 18 HOH HOH . 
E 4 HOH A 14 314 42 HOH HOH . 
E 4 HOH A 15 315 29 HOH HOH . 
E 4 HOH A 16 316 6 HOH HOH . 
E 4 HOH A 17 317 8 HOH HOH . 
E 4 HOH A 18 318 23 HOH HOH . 
E 4 HOH A 19 319 4 HOH HOH . 
E 4 HOH A 20 320 28 HOH HOH . 
E 4 HOH A 21 321 38 HOH HOH . 
E 4 HOH A 22 322 24 HOH HOH . 
E 4 HOH A 23 323 31 HOH HOH . 
E 4 HOH A 24 324 16 HOH HOH . 
E 4 HOH A 25 325 27 HOH HOH . 
E 4 HOH A 26 326 3 HOH HOH . 
E 4 HOH A 27 327 44 HOH HOH . 
E 4 HOH A 28 328 12 HOH HOH . 
E 4 HOH A 29 329 7 HOH HOH . 
E 4 HOH A 30 330 40 HOH HOH . 
E 4 HOH A 31 331 53 HOH HOH . 
E 4 HOH A 32 332 2 HOH HOH . 
E 4 HOH A 33 333 5 HOH HOH . 
E 4 HOH A 34 334 34 HOH HOH . 
E 4 HOH A 35 335 13 HOH HOH . 
E 4 HOH A 36 336 25 HOH HOH . 
E 4 HOH A 37 337 26 HOH HOH . 
E 4 HOH A 38 338 47 HOH HOH . 
E 4 HOH A 39 339 30 HOH HOH . 
E 4 HOH A 40 340 20 HOH HOH . 
E 4 HOH A 41 341 43 HOH HOH . 
E 4 HOH A 42 342 22 HOH HOH . 
E 4 HOH A 43 343 39 HOH HOH . 
E 4 HOH A 44 344 21 HOH HOH . 
E 4 HOH A 45 345 33 HOH HOH . 
E 4 HOH A 46 346 52 HOH HOH . 
E 4 HOH A 47 347 15 HOH HOH . 
E 4 HOH A 48 348 17 HOH HOH . 
E 4 HOH A 49 349 50 HOH HOH . 
E 4 HOH A 50 350 46 HOH HOH . 
E 4 HOH A 51 351 41 HOH HOH . 
E 4 HOH A 52 352 51 HOH HOH . 
E 4 HOH A 53 353 49 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.379 
_atom_site.Cartn_y               -11.935 
_atom_site.Cartn_z               -17.29 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           743 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#