data_5D4G # _model_server_result.job_id Mp76rMFME_dQszwm9OL6CA _model_server_result.datetime_utc '2024-11-13 19:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5D4G # _exptl.entry_id 5D4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D4G _cell.length_a 73.783 _cell.length_b 73.783 _cell.length_c 129.879 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A OE2 GLU 61 A GLU 61 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD2 ASP 89 A ASP 89 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc4 A OD1 ASP 89 A ASP 89 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc5 A OE2 GLU 100 A GLU 100 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 A O ILE 101 A ILE 101 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O2P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O3P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O3P U5P . A U5P 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 C MN MN . A MN 202 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc11 C MN MN . A MN 202 1_555 E O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 C MN MN . A MN 202 1_555 E O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5D4G _atom_sites.fract_transf_matrix[1][1] 0.013553 _atom_sites.fract_transf_matrix[1][2] 0.007825 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 U5P A 1 203 1 U5P U5P . E 4 HOH A 1 301 9 HOH HOH . E 4 HOH A 2 302 1 HOH HOH . E 4 HOH A 3 303 35 HOH HOH . E 4 HOH A 4 304 19 HOH HOH . E 4 HOH A 5 305 10 HOH HOH . E 4 HOH A 6 306 45 HOH HOH . E 4 HOH A 7 307 48 HOH HOH . E 4 HOH A 8 308 11 HOH HOH . E 4 HOH A 9 309 32 HOH HOH . E 4 HOH A 10 310 14 HOH HOH . E 4 HOH A 11 311 36 HOH HOH . E 4 HOH A 12 312 37 HOH HOH . E 4 HOH A 13 313 18 HOH HOH . E 4 HOH A 14 314 42 HOH HOH . E 4 HOH A 15 315 29 HOH HOH . E 4 HOH A 16 316 6 HOH HOH . E 4 HOH A 17 317 8 HOH HOH . E 4 HOH A 18 318 23 HOH HOH . E 4 HOH A 19 319 4 HOH HOH . E 4 HOH A 20 320 28 HOH HOH . E 4 HOH A 21 321 38 HOH HOH . E 4 HOH A 22 322 24 HOH HOH . E 4 HOH A 23 323 31 HOH HOH . E 4 HOH A 24 324 16 HOH HOH . E 4 HOH A 25 325 27 HOH HOH . E 4 HOH A 26 326 3 HOH HOH . E 4 HOH A 27 327 44 HOH HOH . E 4 HOH A 28 328 12 HOH HOH . E 4 HOH A 29 329 7 HOH HOH . E 4 HOH A 30 330 40 HOH HOH . E 4 HOH A 31 331 53 HOH HOH . E 4 HOH A 32 332 2 HOH HOH . E 4 HOH A 33 333 5 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 13 HOH HOH . E 4 HOH A 36 336 25 HOH HOH . E 4 HOH A 37 337 26 HOH HOH . E 4 HOH A 38 338 47 HOH HOH . E 4 HOH A 39 339 30 HOH HOH . E 4 HOH A 40 340 20 HOH HOH . E 4 HOH A 41 341 43 HOH HOH . E 4 HOH A 42 342 22 HOH HOH . E 4 HOH A 43 343 39 HOH HOH . E 4 HOH A 44 344 21 HOH HOH . E 4 HOH A 45 345 33 HOH HOH . E 4 HOH A 46 346 52 HOH HOH . E 4 HOH A 47 347 15 HOH HOH . E 4 HOH A 48 348 17 HOH HOH . E 4 HOH A 49 349 50 HOH HOH . E 4 HOH A 50 350 46 HOH HOH . E 4 HOH A 51 351 41 HOH HOH . E 4 HOH A 52 352 51 HOH HOH . E 4 HOH A 53 353 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.716 _atom_site.Cartn_y -15.007 _atom_site.Cartn_z -19.328 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #