data_5D52
#
_model_server_result.job_id            3D3M8Sd_QY1UPuAFSRbCkA 
_model_server_result.datetime_utc      '2024-11-24 08:01:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d52 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5D52 
#
_exptl.entry_id    5D52 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D52 
_cell.length_a            79.71 
_cell.length_b            79.71 
_cell.length_c            79.71 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D52 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 226 n n 
P O2 PO4 sing 227 n n 
P O3 PO4 sing 228 n n 
P O4 PO4 sing 229 n n 
#
_atom_sites.entry_id                     5D52 
_atom_sites.fract_transf_matrix[1][1]    0.012545 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012545 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 B 1 101 1 PO4 PO4 . 
D 3 PO4 B 1 102 2 PO4 PO4 . 
E 4 HOH A 1 101 73 HOH HOH . 
E 4 HOH A 2 102 79 HOH HOH . 
E 4 HOH A 3 103 74 HOH HOH . 
E 4 HOH A 4 104 81 HOH HOH . 
E 4 HOH A 5 105 30 HOH HOH . 
E 4 HOH A 6 106 7 HOH HOH . 
E 4 HOH A 7 107 8 HOH HOH . 
E 4 HOH A 8 108 15 HOH HOH . 
E 4 HOH A 9 109 80 HOH HOH . 
E 4 HOH A 10 110 2 HOH HOH . 
E 4 HOH A 11 111 28 HOH HOH . 
F 4 HOH B 1 201 72 HOH HOH . 
F 4 HOH B 2 202 39 HOH HOH . 
F 4 HOH B 3 203 10 HOH HOH . 
F 4 HOH B 4 204 13 HOH HOH . 
F 4 HOH B 5 205 22 HOH HOH . 
F 4 HOH B 6 206 82 HOH HOH . 
F 4 HOH B 7 207 1 HOH HOH . 
F 4 HOH B 8 208 6 HOH HOH . 
F 4 HOH B 9 209 23 HOH HOH . 
F 4 HOH B 10 210 60 HOH HOH . 
F 4 HOH B 11 211 3 HOH HOH . 
F 4 HOH B 12 212 5 HOH HOH . 
F 4 HOH B 13 213 11 HOH HOH . 
F 4 HOH B 14 214 52 HOH HOH . 
F 4 HOH B 15 215 4 HOH HOH . 
F 4 HOH B 16 216 9 HOH HOH . 
F 4 HOH B 17 217 27 HOH HOH . 
F 4 HOH B 18 218 25 HOH HOH . 
F 4 HOH B 19 219 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 3 -5.884 -5.886 -5.99 0.3 43.16 ? P PO4 102 B 1 
HETATM 2 O O1 PO4 . . . D 3 -6.811 -6.735 -6.82 0.3 41.51 ? O1 PO4 102 B 1 
HETATM 3 O O2 PO4 . . . D 3 -6.119 -4.43 -6.297 0.3 44.81 ? O2 PO4 102 B 1 
HETATM 4 O O3 PO4 . . . D 3 -4.454 -6.242 -6.311 0.3 45.1 -1 O3 PO4 102 B 1 
HETATM 5 O O4 PO4 . . . D 3 -6.153 -6.127 -4.526 0.3 44.92 ? O4 PO4 102 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#