data_5D53 # _model_server_result.job_id S7MbZcXzgM40YjSQU9I8ow _model_server_result.datetime_utc '2024-11-08 12:58:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 5D53 # _exptl.entry_id 5D53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D53 _cell.length_a 77.511 _cell.length_b 77.511 _cell.length_c 77.511 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 203 n n C48 H481 PE5 sing 204 n n C48 H482 PE5 sing 205 n n C48 H483 PE5 sing 206 n n C50 O1 PE5 sing 207 n n C50 H501 PE5 sing 208 n n C50 H502 PE5 sing 209 n n O1 C1 PE5 sing 210 n n C1 C2 PE5 sing 211 n n C1 H11 PE5 sing 212 n n C1 H12 PE5 sing 213 n n C2 O2 PE5 sing 214 n n C2 H21 PE5 sing 215 n n C2 H22 PE5 sing 216 n n O2 C3 PE5 sing 217 n n C3 C4 PE5 sing 218 n n C3 H31 PE5 sing 219 n n C3 H32 PE5 sing 220 n n C4 O3 PE5 sing 221 n n C4 H41 PE5 sing 222 n n C4 H42 PE5 sing 223 n n O3 C5 PE5 sing 224 n n C5 C6 PE5 sing 225 n n C5 H51 PE5 sing 226 n n C5 H52A PE5 sing 227 n n C6 O4 PE5 sing 228 n n C6 H61 PE5 sing 229 n n C6 H62 PE5 sing 230 n n O4 C7 PE5 sing 231 n n C7 C8 PE5 sing 232 n n C7 H71 PE5 sing 233 n n C7 H72 PE5 sing 234 n n C8 O5 PE5 sing 235 n n C8 H81 PE5 sing 236 n n C8 H82 PE5 sing 237 n n O5 C9 PE5 sing 238 n n C9 C10 PE5 sing 239 n n C9 H91 PE5 sing 240 n n C9 H92 PE5 sing 241 n n C10 O6 PE5 sing 242 n n C10 H101 PE5 sing 243 n n C10 H102 PE5 sing 244 n n O6 C11 PE5 sing 245 n n C11 C12 PE5 sing 246 n n C11 H111 PE5 sing 247 n n C11 H112 PE5 sing 248 n n C12 O7 PE5 sing 249 n n C12 H121 PE5 sing 250 n n C12 H122 PE5 sing 251 n n O7 C13 PE5 sing 252 n n C13 C14 PE5 sing 253 n n C13 H131 PE5 sing 254 n n C13 H132 PE5 sing 255 n n C14 O8 PE5 sing 256 n n C14 H141 PE5 sing 257 n n C14 H142 PE5 sing 258 n n O8 C15 PE5 sing 259 n n C15 C16 PE5 sing 260 n n C15 H151 PE5 sing 261 n n C15 H152 PE5 sing 262 n n C16 O52 PE5 sing 263 n n C16 H161 PE5 sing 264 n n C16 H162 PE5 sing 265 n n O52 H52 PE5 sing 266 n n # _atom_sites.entry_id 5D53 _atom_sites.fract_transf_matrix[1][1] 0.012901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 B 1 101 1 PO4 PO4 . D 3 PO4 B 1 102 2 PO4 PO4 . E 4 PE5 B 1 103 1 PE5 PE5 . F 5 HOH A 1 101 73 HOH HOH . F 5 HOH A 2 102 62 HOH HOH . F 5 HOH A 3 103 41 HOH HOH . F 5 HOH A 4 104 47 HOH HOH . F 5 HOH A 5 105 50 HOH HOH . F 5 HOH A 6 106 21 HOH HOH . F 5 HOH A 7 107 74 HOH HOH . F 5 HOH A 8 108 30 HOH HOH . F 5 HOH A 9 109 28 HOH HOH . F 5 HOH A 10 110 5 HOH HOH . F 5 HOH A 11 111 3 HOH HOH . F 5 HOH A 12 112 77 HOH HOH . F 5 HOH A 13 113 7 HOH HOH . F 5 HOH A 14 114 17 HOH HOH . F 5 HOH A 15 115 15 HOH HOH . F 5 HOH A 16 116 36 HOH HOH . F 5 HOH A 17 117 19 HOH HOH . F 5 HOH A 18 118 2 HOH HOH . F 5 HOH A 19 119 44 HOH HOH . F 5 HOH A 20 120 42 HOH HOH . F 5 HOH A 21 121 37 HOH HOH . F 5 HOH A 22 122 64 HOH HOH . F 5 HOH A 23 123 33 HOH HOH . F 5 HOH A 24 124 49 HOH HOH . F 5 HOH A 25 125 35 HOH HOH . G 5 HOH B 1 201 54 HOH HOH . G 5 HOH B 2 202 78 HOH HOH . G 5 HOH B 3 203 1 HOH HOH . G 5 HOH B 4 204 72 HOH HOH . G 5 HOH B 5 205 13 HOH HOH . G 5 HOH B 6 206 38 HOH HOH . G 5 HOH B 7 207 55 HOH HOH . G 5 HOH B 8 208 34 HOH HOH . G 5 HOH B 9 209 25 HOH HOH . G 5 HOH B 10 210 18 HOH HOH . G 5 HOH B 11 211 63 HOH HOH . G 5 HOH B 12 212 26 HOH HOH . G 5 HOH B 13 213 4 HOH HOH . G 5 HOH B 14 214 22 HOH HOH . G 5 HOH B 15 215 60 HOH HOH . G 5 HOH B 16 216 10 HOH HOH . G 5 HOH B 17 217 8 HOH HOH . G 5 HOH B 18 218 11 HOH HOH . G 5 HOH B 19 219 39 HOH HOH . G 5 HOH B 20 220 6 HOH HOH . G 5 HOH B 21 221 9 HOH HOH . G 5 HOH B 22 222 23 HOH HOH . G 5 HOH B 23 223 24 HOH HOH . G 5 HOH B 24 224 52 HOH HOH . G 5 HOH B 25 225 48 HOH HOH . G 5 HOH B 26 226 70 HOH HOH . G 5 HOH B 27 227 71 HOH HOH . G 5 HOH B 28 228 12 HOH HOH . G 5 HOH B 29 229 27 HOH HOH . G 5 HOH B 30 230 68 HOH HOH . G 5 HOH B 31 231 69 HOH HOH . G 5 HOH B 32 232 76 HOH HOH . G 5 HOH B 33 233 56 HOH HOH . G 5 HOH B 34 234 20 HOH HOH . G 5 HOH B 35 235 53 HOH HOH . G 5 HOH B 36 236 46 HOH HOH . G 5 HOH B 37 237 32 HOH HOH . G 5 HOH B 38 238 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PE5 . . . E 4 -13.777 -21.155 -12.658 0.92 52.2 ? C3 PE5 103 B 1 HETATM 2 C C4 PE5 . . . E 4 -12.685 -22.22 -12.478 0.92 42.42 ? C4 PE5 103 B 1 HETATM 3 O O3 PE5 . . . E 4 -12.347 -22.345 -11.099 0.92 42.51 ? O3 PE5 103 B 1 HETATM 4 C C5 PE5 . . . E 4 -11.168 -23.05 -10.839 0.92 41.51 ? C5 PE5 103 B 1 HETATM 5 C C6 PE5 . . . E 4 -11.471 -24.536 -10.459 0.92 51.69 ? C6 PE5 103 B 1 HETATM 6 O O4 PE5 . . . E 4 -10.8 -25.408 -11.371 0.92 52.32 ? O4 PE5 103 B 1 HETATM 7 C C7 PE5 . . . E 4 -11.178 -26.79 -11.284 0.92 49.64 ? C7 PE5 103 B 1 HETATM 8 C C8 PE5 . . . E 4 -11.283 -27.398 -12.736 0.92 48.86 ? C8 PE5 103 B 1 HETATM 9 O O5 PE5 . . . E 4 -11.437 -28.776 -12.681 0.92 55.12 ? O5 PE5 103 B 1 HETATM 10 C C9 PE5 . . . E 4 -12.353 -29.323 -13.651 0.92 56.82 ? C9 PE5 103 B 1 HETATM 11 C C10 PE5 . . . E 4 -12.001 -28.862 -15.103 0.92 49.54 ? C10 PE5 103 B 1 HETATM 12 H H31 PE5 . . . E 4 -14.652 -21.548 -12.459 0.92 62.64 ? H31 PE5 103 B 1 HETATM 13 H H32 PE5 . . . E 4 -13.767 -20.829 -13.582 0.92 62.64 ? H32 PE5 103 B 1 HETATM 14 H H41 PE5 . . . E 4 -13.014 -23.079 -12.81 0.92 50.9 ? H41 PE5 103 B 1 HETATM 15 H H42 PE5 . . . E 4 -11.86 -21.949 -13.005 0.92 50.9 ? H42 PE5 103 B 1 HETATM 16 H H51 PE5 . . . E 4 -10.6 -23.031 -11.637 0.92 49.81 ? H51 PE5 103 B 1 HETATM 17 H H52A PE5 . . . E 4 -10.701 -22.625 -10.108 0.92 49.81 ? H52A PE5 103 B 1 HETATM 18 H H61 PE5 . . . E 4 -11.164 -24.706 -9.571 0.92 62.02 ? H61 PE5 103 B 1 HETATM 19 H H62 PE5 . . . E 4 -12.471 -24.699 -10.509 0.92 62.02 ? H62 PE5 103 B 1 HETATM 20 H H71 PE5 . . . E 4 -10.489 -27.294 -10.759 0.92 59.56 ? H71 PE5 103 B 1 HETATM 21 H H72 PE5 . . . E 4 -12.07 -26.864 -10.826 0.92 59.56 ? H72 PE5 103 B 1 HETATM 22 H H81 PE5 . . . E 4 -10.462 -27.182 -13.239 0.92 58.63 ? H81 PE5 103 B 1 HETATM 23 H H82 PE5 . . . E 4 -12.043 -27.012 -13.188 0.92 58.63 ? H82 PE5 103 B 1 HETATM 24 H H91 PE5 . . . E 4 -13.299 -29.017 -13.425 0.92 68.19 ? H91 PE5 103 B 1 HETATM 25 H H92 PE5 . . . E 4 -12.312 -30.341 -13.606 0.92 68.19 ? H92 PE5 103 B 1 HETATM 26 H H101 PE5 . . . E 4 -12.115 -29.605 -15.716 0.92 59.44 ? H101 PE5 103 B 1 HETATM 27 H H102 PE5 . . . E 4 -12.593 -28.131 -15.363 0.92 59.44 ? H102 PE5 103 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #