data_5D54 # _model_server_result.job_id 991LLj-bQwWilbPwuPdElA _model_server_result.datetime_utc '2024-11-08 11:46:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5D54 # _exptl.entry_id 5D54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D54 _cell.length_a 77.51 _cell.length_b 77.51 _cell.length_c 77.51 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 290 n n P O2 PO4 sing 291 n n P O3 PO4 sing 292 n n P O4 PO4 sing 293 n n # _atom_sites.entry_id 5D54 _atom_sites.fract_transf_matrix[1][1] 0.012902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 B 1 101 1 PO4 PO4 . D 3 PO4 B 1 102 2 PO4 PO4 . E 4 PE5 B 1 103 1 PE5 PE5 . F 5 HOH A 1 101 26 HOH HOH . F 5 HOH A 2 102 36 HOH HOH . F 5 HOH A 3 103 21 HOH HOH . F 5 HOH A 4 104 40 HOH HOH . F 5 HOH A 5 105 24 HOH HOH . F 5 HOH A 6 106 37 HOH HOH . F 5 HOH A 7 107 2 HOH HOH . F 5 HOH A 8 108 34 HOH HOH . F 5 HOH A 9 109 23 HOH HOH . F 5 HOH A 10 110 3 HOH HOH . F 5 HOH A 11 111 14 HOH HOH . G 5 HOH B 1 201 35 HOH HOH . G 5 HOH B 2 202 38 HOH HOH . G 5 HOH B 3 203 5 HOH HOH . G 5 HOH B 4 204 22 HOH HOH . G 5 HOH B 5 205 1 HOH HOH . G 5 HOH B 6 206 41 HOH HOH . G 5 HOH B 7 207 12 HOH HOH . G 5 HOH B 8 208 18 HOH HOH . G 5 HOH B 9 209 7 HOH HOH . G 5 HOH B 10 210 8 HOH HOH . G 5 HOH B 11 211 15 HOH HOH . G 5 HOH B 12 212 20 HOH HOH . G 5 HOH B 13 213 16 HOH HOH . G 5 HOH B 14 214 9 HOH HOH . G 5 HOH B 15 215 13 HOH HOH . G 5 HOH B 16 216 30 HOH HOH . G 5 HOH B 17 217 6 HOH HOH . G 5 HOH B 18 218 10 HOH HOH . G 5 HOH B 19 219 33 HOH HOH . G 5 HOH B 20 220 4 HOH HOH . G 5 HOH B 21 221 11 HOH HOH . G 5 HOH B 22 222 39 HOH HOH . G 5 HOH B 23 223 19 HOH HOH . G 5 HOH B 24 224 32 HOH HOH . G 5 HOH B 25 225 27 HOH HOH . G 5 HOH B 26 226 17 HOH HOH . G 5 HOH B 27 227 28 HOH HOH . G 5 HOH B 28 228 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -2.749 -9.538 -6.032 0.75 47.23 ? P PO4 101 B 1 HETATM 2 O O1 PO4 . . . C 3 -2.634 -10.618 -7.079 0.75 82.5 ? O1 PO4 101 B 1 HETATM 3 O O2 PO4 . . . C 3 -1.406 -9.282 -5.387 0.75 61.83 ? O2 PO4 101 B 1 HETATM 4 O O3 PO4 . . . C 3 -3.216 -8.272 -6.698 0.75 49.88 -1 O3 PO4 101 B 1 HETATM 5 O O4 PO4 . . . C 3 -3.755 -9.952 -4.985 0.75 40.55 ? O4 PO4 101 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #