data_5D54 # _model_server_result.job_id OSDJQPQiIhU5k6-abmjNPQ _model_server_result.datetime_utc '2024-11-21 22:51:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 5D54 # _exptl.entry_id 5D54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D54 _cell.length_a 77.51 _cell.length_b 77.51 _cell.length_c 77.51 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 203 n n C48 H481 PE5 sing 204 n n C48 H482 PE5 sing 205 n n C48 H483 PE5 sing 206 n n C50 O1 PE5 sing 207 n n C50 H501 PE5 sing 208 n n C50 H502 PE5 sing 209 n n O1 C1 PE5 sing 210 n n C1 C2 PE5 sing 211 n n C1 H11 PE5 sing 212 n n C1 H12 PE5 sing 213 n n C2 O2 PE5 sing 214 n n C2 H21 PE5 sing 215 n n C2 H22 PE5 sing 216 n n O2 C3 PE5 sing 217 n n C3 C4 PE5 sing 218 n n C3 H31 PE5 sing 219 n n C3 H32 PE5 sing 220 n n C4 O3 PE5 sing 221 n n C4 H41 PE5 sing 222 n n C4 H42 PE5 sing 223 n n O3 C5 PE5 sing 224 n n C5 C6 PE5 sing 225 n n C5 H51 PE5 sing 226 n n C5 H52A PE5 sing 227 n n C6 O4 PE5 sing 228 n n C6 H61 PE5 sing 229 n n C6 H62 PE5 sing 230 n n O4 C7 PE5 sing 231 n n C7 C8 PE5 sing 232 n n C7 H71 PE5 sing 233 n n C7 H72 PE5 sing 234 n n C8 O5 PE5 sing 235 n n C8 H81 PE5 sing 236 n n C8 H82 PE5 sing 237 n n O5 C9 PE5 sing 238 n n C9 C10 PE5 sing 239 n n C9 H91 PE5 sing 240 n n C9 H92 PE5 sing 241 n n C10 O6 PE5 sing 242 n n C10 H101 PE5 sing 243 n n C10 H102 PE5 sing 244 n n O6 C11 PE5 sing 245 n n C11 C12 PE5 sing 246 n n C11 H111 PE5 sing 247 n n C11 H112 PE5 sing 248 n n C12 O7 PE5 sing 249 n n C12 H121 PE5 sing 250 n n C12 H122 PE5 sing 251 n n O7 C13 PE5 sing 252 n n C13 C14 PE5 sing 253 n n C13 H131 PE5 sing 254 n n C13 H132 PE5 sing 255 n n C14 O8 PE5 sing 256 n n C14 H141 PE5 sing 257 n n C14 H142 PE5 sing 258 n n O8 C15 PE5 sing 259 n n C15 C16 PE5 sing 260 n n C15 H151 PE5 sing 261 n n C15 H152 PE5 sing 262 n n C16 O52 PE5 sing 263 n n C16 H161 PE5 sing 264 n n C16 H162 PE5 sing 265 n n O52 H52 PE5 sing 266 n n # _atom_sites.entry_id 5D54 _atom_sites.fract_transf_matrix[1][1] 0.012902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 B 1 101 1 PO4 PO4 . D 3 PO4 B 1 102 2 PO4 PO4 . E 4 PE5 B 1 103 1 PE5 PE5 . F 5 HOH A 1 101 26 HOH HOH . F 5 HOH A 2 102 36 HOH HOH . F 5 HOH A 3 103 21 HOH HOH . F 5 HOH A 4 104 40 HOH HOH . F 5 HOH A 5 105 24 HOH HOH . F 5 HOH A 6 106 37 HOH HOH . F 5 HOH A 7 107 2 HOH HOH . F 5 HOH A 8 108 34 HOH HOH . F 5 HOH A 9 109 23 HOH HOH . F 5 HOH A 10 110 3 HOH HOH . F 5 HOH A 11 111 14 HOH HOH . G 5 HOH B 1 201 35 HOH HOH . G 5 HOH B 2 202 38 HOH HOH . G 5 HOH B 3 203 5 HOH HOH . G 5 HOH B 4 204 22 HOH HOH . G 5 HOH B 5 205 1 HOH HOH . G 5 HOH B 6 206 41 HOH HOH . G 5 HOH B 7 207 12 HOH HOH . G 5 HOH B 8 208 18 HOH HOH . G 5 HOH B 9 209 7 HOH HOH . G 5 HOH B 10 210 8 HOH HOH . G 5 HOH B 11 211 15 HOH HOH . G 5 HOH B 12 212 20 HOH HOH . G 5 HOH B 13 213 16 HOH HOH . G 5 HOH B 14 214 9 HOH HOH . G 5 HOH B 15 215 13 HOH HOH . G 5 HOH B 16 216 30 HOH HOH . G 5 HOH B 17 217 6 HOH HOH . G 5 HOH B 18 218 10 HOH HOH . G 5 HOH B 19 219 33 HOH HOH . G 5 HOH B 20 220 4 HOH HOH . G 5 HOH B 21 221 11 HOH HOH . G 5 HOH B 22 222 39 HOH HOH . G 5 HOH B 23 223 19 HOH HOH . G 5 HOH B 24 224 32 HOH HOH . G 5 HOH B 25 225 27 HOH HOH . G 5 HOH B 26 226 17 HOH HOH . G 5 HOH B 27 227 28 HOH HOH . G 5 HOH B 28 228 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PE5 . . . E 4 -14.129 -14.069 -21.69 1 54.56 ? C3 PE5 103 B 1 HETATM 2 C C4 PE5 . . . E 4 -12.722 -13.491 -21.489 1 45.28 ? C4 PE5 103 B 1 HETATM 3 O O3 PE5 . . . E 4 -12.473 -12.476 -22.452 1 55.91 ? O3 PE5 103 B 1 HETATM 4 C C5 PE5 . . . E 4 -11.167 -11.992 -22.431 1 40.87 ? C5 PE5 103 B 1 HETATM 5 C C6 PE5 . . . E 4 -11.009 -10.857 -23.49 1 51.79 ? C6 PE5 103 B 1 HETATM 6 O O4 PE5 . . . E 4 -10.534 -11.391 -24.719 1 65.32 ? O4 PE5 103 B 1 HETATM 7 C C7 PE5 . . . E 4 -10.818 -10.552 -25.841 1 50.7 ? C7 PE5 103 B 1 HETATM 8 C C8 PE5 . . . E 4 -12.196 -10.996 -26.455 1 48.56 ? C8 PE5 103 B 1 HETATM 9 O O5 PE5 . . . E 4 -12.107 -10.977 -27.838 1 68.47 ? O5 PE5 103 B 1 HETATM 10 C C9 PE5 . . . E 4 -12.789 -12.059 -28.493 1 68.74 ? C9 PE5 103 B 1 HETATM 11 C C10 PE5 . . . E 4 -14.316 -12.014 -28.171 1 57.2 ? C10 PE5 103 B 1 HETATM 12 H H31 PE5 . . . E 4 -14.79 -13.462 -21.296 1 65.47 ? H31 PE5 103 B 1 HETATM 13 H H32 PE5 . . . E 4 -14.189 -14.944 -21.254 1 65.47 ? H32 PE5 103 B 1 HETATM 14 H H41 PE5 . . . E 4 -12.653 -13.11 -20.591 1 54.34 ? H41 PE5 103 B 1 HETATM 15 H H42 PE5 . . . E 4 -12.035 -14.232 -21.594 1 54.34 ? H42 PE5 103 B 1 HETATM 16 H H51 PE5 . . . E 4 -10.965 -11.638 -21.54 1 49.04 ? H51 PE5 103 B 1 HETATM 17 H H52A PE5 . . . E 4 -10.555 -12.711 -22.637 1 49.04 ? H52A PE5 103 B 1 HETATM 18 H H61 PE5 . . . E 4 -11.856 -10.439 -23.634 1 62.15 ? H61 PE5 103 B 1 HETATM 19 H H62 PE5 . . . E 4 -10.349 -10.168 -23.146 1 62.15 ? H62 PE5 103 B 1 HETATM 20 H H71 PE5 . . . E 4 -10.872 -9.597 -25.544 1 60.84 ? H71 PE5 103 B 1 HETATM 21 H H72 PE5 . . . E 4 -10.093 -10.652 -26.53 1 60.84 ? H72 PE5 103 B 1 HETATM 22 H H81 PE5 . . . E 4 -12.905 -10.374 -26.162 1 58.27 ? H81 PE5 103 B 1 HETATM 23 H H82 PE5 . . . E 4 -12.408 -11.89 -26.159 1 58.27 ? H82 PE5 103 B 1 HETATM 24 H H91 PE5 . . . E 4 -12.402 -12.945 -28.169 1 82.49 ? H91 PE5 103 B 1 HETATM 25 H H92 PE5 . . . E 4 -12.654 -11.979 -29.5 1 82.49 ? H92 PE5 103 B 1 HETATM 26 H H101 PE5 . . . E 4 -14.811 -12.427 -28.896 1 68.63 ? H101 PE5 103 B 1 HETATM 27 H H102 PE5 . . . E 4 -14.487 -12.499 -27.342 1 68.63 ? H102 PE5 103 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #