data_5D56 # _model_server_result.job_id 7IhjiVLyVqAbEMZQRysjDA _model_server_result.datetime_utc '2024-11-23 20:27:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 5D56 # _exptl.entry_id 5D56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D56 _cell.length_a 74.8 _cell.length_b 93.04 _cell.length_c 143.05 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,U,V 1 1 D,E,F,O,P,Q,R,S,T,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 D OE1 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D OE2 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 5D56 _atom_sites.fract_transf_matrix[1][1] 0.013369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78M A 1 201 1 78M 78M . H 2 78M A 1 202 2 78M 78M . I 2 78M A 1 203 13 78M 78M . J 2 78M A 1 204 14 78M 78M . K 2 78M B 1 201 1118 78M 78M . L 2 78M B 1 202 3 78M 78M . M 2 78M B 1 203 5 78M 78M . N 2 78M C 1 201 6 78M 78M . O 3 ZN D 1 201 1116 ZN ZN . P 4 FLC D 1 202 1115 FLC FLC . Q 5 ACT D 1 203 1114 ACT ACT . R 2 78M D 1 204 1119 78M 78M . S 2 78M D 1 205 1117 78M 78M . T 2 78M D 1 206 8 78M 78M . U 6 HOH A 1 301 68 HOH HOH . U 6 HOH A 2 302 58 HOH HOH . U 6 HOH A 3 303 82 HOH HOH . V 6 HOH B 1 301 83 HOH HOH . W 6 HOH D 1 301 77 HOH HOH . W 6 HOH D 2 302 51 HOH HOH . W 6 HOH D 3 303 46 HOH HOH . W 6 HOH D 4 304 62 HOH HOH . W 6 HOH D 5 305 84 HOH HOH . X 6 HOH E 1 201 70 HOH HOH . X 6 HOH E 2 202 65 HOH HOH . X 6 HOH E 3 203 81 HOH HOH . X 6 HOH E 4 204 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . H 2 73.092 102.417 133.432 0.96 110.07 ? O21 78M 202 A 1 HETATM 2 C C20 78M . . . H 2 73.678 102.94 134.616 0.96 113.45 ? C20 78M 202 A 1 HETATM 3 C C18 78M . . . H 2 72.764 102.633 135.789 0.96 122.59 ? C18 78M 202 A 1 HETATM 4 O O19 78M . . . H 2 71.511 103.266 135.595 0.96 129.97 ? O19 78M 202 A 1 HETATM 5 C C17 78M . . . H 2 73.392 103.106 137.098 0.96 110.34 ? C17 78M 202 A 1 HETATM 6 O O2 78M . . . H 2 72.415 102.979 138.16 0.96 118.04 ? O2 78M 202 A 1 HETATM 7 C C1 78M . . . H 2 72.948 102.63 139.418 0.96 110.41 ? C1 78M 202 A 1 HETATM 8 O O1 78M . . . H 2 73.347 101.508 139.621 0.96 109.68 ? O1 78M 202 A 1 HETATM 9 C C2 78M . . . H 2 73.042 103.655 140.554 0.96 100.55 ? C2 78M 202 A 1 HETATM 10 C C3 78M . . . H 2 73.273 102.944 141.912 0.96 93.2 ? C3 78M 202 A 1 HETATM 11 C C4 78M . . . H 2 73.619 103.944 143.061 0.96 99.83 ? C4 78M 202 A 1 HETATM 12 C C5 78M . . . H 2 72.431 104.184 144.005 0.96 118.19 ? C5 78M 202 A 1 HETATM 13 C C6 78M . . . H 2 72.868 104.265 145.495 0.96 94.95 ? C6 78M 202 A 1 HETATM 14 C C7 78M . . . H 2 73.119 102.881 146.1 0.96 104.98 ? C7 78M 202 A 1 HETATM 15 C C8 78M . . . H 2 72.861 102.652 147.447 0.96 115.33 ? C8 78M 202 A 1 HETATM 16 C C9 78M . . . H 2 72.335 103.769 148.306 0.96 132.42 ? C9 78M 202 A 1 HETATM 17 C C10 78M . . . H 2 72.212 103.37 149.819 0.96 130.68 ? C10 78M 202 A 1 HETATM 18 C C11 78M . . . H 2 70.804 103.592 150.366 0.96 128.14 ? C11 78M 202 A 1 HETATM 19 C C12 78M . . . H 2 70.807 104.292 151.734 0.96 118.29 ? C12 78M 202 A 1 HETATM 20 C C13 78M . . . H 2 69.388 104.582 152.235 0.96 121.31 ? C13 78M 202 A 1 HETATM 21 C C15 78M . . . H 2 67.972 105.388 154.145 0.96 75.33 ? C15 78M 202 A 1 HETATM 22 C C14 78M . . . H 2 69.362 105.33 153.551 0.96 85.24 ? C14 78M 202 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #