data_5D56
#
_model_server_result.job_id            46hweTn7LlZaQIO5cMjt-w 
_model_server_result.datetime_utc      '2024-11-08 11:54:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":202}' 
#
_entry.id    5D56 
#
_exptl.entry_id    5D56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D56 
_cell.length_a            74.8 
_cell.length_b            93.04 
_cell.length_c            143.05 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,U,V 1 1 
D,E,F,O,P,Q,R,S,T,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc3 D OE1 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc4 D OE2 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 144 n n 
CAC OA1 FLC doub 145 n n 
CAC OA2 FLC sing 146 n n 
CA CB FLC sing 147 n n 
CA HA1 FLC sing 148 n n 
CA HA2 FLC sing 149 n n 
CB CBC FLC sing 150 n n 
CB CG FLC sing 151 n n 
CB OHB FLC sing 152 n n 
CBC OB1 FLC doub 153 n n 
CBC OB2 FLC sing 154 n n 
CG CGC FLC sing 155 n n 
CG HG1 FLC sing 156 n n 
CG HG2 FLC sing 157 n n 
CGC OG1 FLC doub 158 n n 
CGC OG2 FLC sing 159 n n 
OHB HOB FLC sing 160 n n 
#
_atom_sites.entry_id                     5D56 
_atom_sites.fract_transf_matrix[1][1]    0.013369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006991 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 78M A 1 201 1 78M 78M . 
H 2 78M A 1 202 2 78M 78M . 
I 2 78M A 1 203 13 78M 78M . 
J 2 78M A 1 204 14 78M 78M . 
K 2 78M B 1 201 1118 78M 78M . 
L 2 78M B 1 202 3 78M 78M . 
M 2 78M B 1 203 5 78M 78M . 
N 2 78M C 1 201 6 78M 78M . 
O 3 ZN D 1 201 1116 ZN ZN . 
P 4 FLC D 1 202 1115 FLC FLC . 
Q 5 ACT D 1 203 1114 ACT ACT . 
R 2 78M D 1 204 1119 78M 78M . 
S 2 78M D 1 205 1117 78M 78M . 
T 2 78M D 1 206 8 78M 78M . 
U 6 HOH A 1 301 68 HOH HOH . 
U 6 HOH A 2 302 58 HOH HOH . 
U 6 HOH A 3 303 82 HOH HOH . 
V 6 HOH B 1 301 83 HOH HOH . 
W 6 HOH D 1 301 77 HOH HOH . 
W 6 HOH D 2 302 51 HOH HOH . 
W 6 HOH D 3 303 46 HOH HOH . 
W 6 HOH D 4 304 62 HOH HOH . 
W 6 HOH D 5 305 84 HOH HOH . 
X 6 HOH E 1 201 70 HOH HOH . 
X 6 HOH E 2 202 65 HOH HOH . 
X 6 HOH E 3 203 81 HOH HOH . 
X 6 HOH E 4 204 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . P 4 99.876 100.062 118.378 1 173.41 ? CAC FLC 202 D 1 
HETATM 2 C CA FLC . . . P 4 98.965 101.056 117.663 1 186.53 ? CA FLC 202 D 1 
HETATM 3 C CB FLC . . . P 4 97.593 101.431 118.234 1 188.33 ? CB FLC 202 D 1 
HETATM 4 C CBC FLC . . . P 4 96.897 100.307 118.977 1 184.72 ? CBC FLC 202 D 1 
HETATM 5 C CG FLC . . . P 4 96.693 101.811 117.072 1 184.28 ? CG FLC 202 D 1 
HETATM 6 C CGC FLC . . . P 4 97.136 101.217 115.748 1 179.96 ? CGC FLC 202 D 1 
HETATM 7 O OA1 FLC . . . P 4 101.129 100.126 118.232 1 161.17 ? OA1 FLC 202 D 1 
HETATM 8 O OA2 FLC . . . P 4 99.427 99.145 119.113 1 180.32 ? OA2 FLC 202 D 1 
HETATM 9 O OB1 FLC . . . P 4 96.617 99.258 118.345 1 191.65 ? OB1 FLC 202 D 1 
HETATM 10 O OB2 FLC . . . P 4 96.594 100.417 120.202 1 162.75 ? OB2 FLC 202 D 1 
HETATM 11 O OG1 FLC . . . P 4 97.693 101.947 114.883 1 181.91 ? OG1 FLC 202 D 1 
HETATM 12 O OG2 FLC . . . P 4 96.956 99.994 115.498 1 180.21 ? OG2 FLC 202 D 1 
HETATM 13 O OHB FLC . . . P 4 97.697 102.542 119.1 1 191.66 ? OHB FLC 202 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#