data_5D57 # _model_server_result.job_id a053WUVbXXEERtsyI5kZ4A _model_server_result.datetime_utc '2024-11-08 13:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 5D57 # _exptl.entry_id 5D57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D57 _cell.length_a 75.32 _cell.length_b 91.34 _cell.length_c 143.36 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,W,X,Y 1 1 D,E,F,S,T,U,V,Z,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 5D57 _atom_sites.fract_transf_matrix[1][1] 0.013277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78M A 1 201 1126 78M 78M . H 2 78M A 1 202 1130 78M 78M . I 2 78M A 1 203 1132 78M 78M . J 2 78M A 1 204 1133 78M 78M . K 2 78M A 1 205 1134 78M 78M . L 2 78M A 1 206 1141 78M 78M . M 2 78M B 1 201 1135 78M 78M . N 2 78M B 1 202 1136 78M 78M . O 2 78M B 1 203 1137 78M 78M . P 2 78M B 1 204 1118 78M 78M . Q 2 78M C 1 201 1127 78M 78M . R 2 78M C 1 202 1138 78M 78M . S 2 78M D 1 201 1131 78M 78M . T 2 78M D 1 202 1140 78M 78M . U 2 78M D 1 203 1117 78M 78M . V 2 78M D 1 204 1119 78M 78M . W 3 HOH A 1 301 98 HOH HOH . W 3 HOH A 2 302 101 HOH HOH . W 3 HOH A 3 303 97 HOH HOH . W 3 HOH A 4 304 16 HOH HOH . W 3 HOH A 5 305 59 HOH HOH . W 3 HOH A 6 306 102 HOH HOH . W 3 HOH A 7 307 99 HOH HOH . X 3 HOH B 1 301 95 HOH HOH . X 3 HOH B 2 302 10 HOH HOH . X 3 HOH B 3 303 100 HOH HOH . X 3 HOH B 4 304 45 HOH HOH . X 3 HOH B 5 305 62 HOH HOH . X 3 HOH B 6 306 52 HOH HOH . X 3 HOH B 7 307 96 HOH HOH . Y 3 HOH C 1 301 61 HOH HOH . Y 3 HOH C 2 302 2 HOH HOH . Y 3 HOH C 3 303 21 HOH HOH . Y 3 HOH C 4 304 76 HOH HOH . Z 3 HOH D 1 301 74 HOH HOH . Z 3 HOH D 2 302 73 HOH HOH . Z 3 HOH D 3 303 24 HOH HOH . Z 3 HOH D 4 304 7 HOH HOH . Z 3 HOH D 5 305 64 HOH HOH . AA 3 HOH E 1 201 38 HOH HOH . AA 3 HOH E 2 202 70 HOH HOH . AA 3 HOH E 3 203 41 HOH HOH . AA 3 HOH E 4 204 53 HOH HOH . AA 3 HOH E 5 205 65 HOH HOH . AA 3 HOH E 6 206 79 HOH HOH . AA 3 HOH E 7 207 37 HOH HOH . AA 3 HOH E 8 208 78 HOH HOH . AA 3 HOH E 9 209 69 HOH HOH . AA 3 HOH E 10 210 15 HOH HOH . AA 3 HOH E 11 211 60 HOH HOH . BA 3 HOH F 1 201 94 HOH HOH . BA 3 HOH F 2 202 88 HOH HOH . BA 3 HOH F 3 203 35 HOH HOH . BA 3 HOH F 4 204 66 HOH HOH . BA 3 HOH F 5 205 33 HOH HOH . BA 3 HOH F 6 206 89 HOH HOH . BA 3 HOH F 7 207 12 HOH HOH . BA 3 HOH F 8 208 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . I 2 52.797 87.408 90.563 1 104.83 ? O21 78M 203 A 1 HETATM 2 C C20 78M . . . I 2 52.313 86.138 91.007 1 89.52 ? C20 78M 203 A 1 HETATM 3 C C18 78M . . . I 2 51.615 85.413 89.856 1 81.4 ? C18 78M 203 A 1 HETATM 4 O O19 78M . . . I 2 52.107 84.089 89.754 1 67.08 ? O19 78M 203 A 1 HETATM 5 C C17 78M . . . I 2 51.857 86.115 88.512 1 96.7 ? C17 78M 203 A 1 HETATM 6 O O2 78M . . . I 2 52.667 85.249 87.655 1 80.36 ? O2 78M 203 A 1 HETATM 7 C C1 78M . . . I 2 51.915 84.497 86.721 1 69.18 ? C1 78M 203 A 1 HETATM 8 O O1 78M . . . I 2 50.798 84.112 86.977 1 62.13 ? O1 78M 203 A 1 HETATM 9 C C2 78M . . . I 2 52.508 84.15 85.356 1 71.39 ? C2 78M 203 A 1 HETATM 10 C C3 78M . . . I 2 51.837 82.894 84.751 1 49.15 ? C3 78M 203 A 1 HETATM 11 C C4 78M . . . I 2 51.134 83.219 83.402 1 49.49 ? C4 78M 203 A 1 HETATM 12 C C5 78M . . . I 2 51.311 82.092 82.386 1 55.5 ? C5 78M 203 A 1 HETATM 13 C C6 78M . . . I 2 51.808 82.636 81.02 1 82.37 ? C6 78M 203 A 1 HETATM 14 C C7 78M . . . I 2 52.169 81.536 80.01 1 86.29 ? C7 78M 203 A 1 HETATM 15 C C8 78M . . . I 2 51.858 81.71 78.663 1 71.16 ? C8 78M 203 A 1 HETATM 16 C C9 78M . . . I 2 51.166 82.975 78.218 1 87.79 ? C9 78M 203 A 1 HETATM 17 C C10 78M . . . I 2 49.595 82.952 78.34 1 87.12 ? C10 78M 203 A 1 HETATM 18 C C11 78M . . . I 2 49.032 84.32 78.719 1 78.97 ? C11 78M 203 A 1 HETATM 19 C C12 78M . . . I 2 48.147 84.966 77.644 1 83.39 ? C12 78M 203 A 1 HETATM 20 C C13 78M . . . I 2 48.319 86.486 77.574 1 76.75 ? C13 78M 203 A 1 HETATM 21 C C15 78M . . . I 2 48.603 86.816 75.096 1 70.95 ? C15 78M 203 A 1 HETATM 22 C C14 78M . . . I 2 47.745 87.085 76.311 1 80.1 ? C14 78M 203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #