data_5D58 # _model_server_result.job_id R_AZ_Hd61zpuCWUnA9WCoA _model_server_result.datetime_utc '2024-11-08 09:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5D58 # _exptl.entry_id 5D58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ALANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D58 _cell.length_a 100.16 _cell.length_b 109.52 _cell.length_c 111.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id ALA _chem_comp.mon_nstd_flag y _chem_comp.name ALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ALA sing 56 n n N H ALA sing 57 n n N H2 ALA sing 58 n n CA C ALA sing 59 n n CA CB ALA sing 60 n n CA HA ALA sing 61 n n C O ALA doub 62 n n C OXT ALA sing 63 n n CB HB1 ALA sing 64 n n CB HB2 ALA sing 65 n n CB HB3 ALA sing 66 n n OXT HXT ALA sing 67 n n # _atom_sites.entry_id 5D58 _atom_sites.fract_transf_matrix[1][1] 0.009984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 501 32 ALA ALA . C 3 PHE A 1 502 33 PHE PHE . D 4 PO4 A 1 503 19 PO4 PO4 . E 5 78M A 1 504 1 78M 78M . F 5 78M A 1 505 2 78M 78M . G 5 78M A 1 506 3 78M 78M . H 5 78M A 1 507 4 78M 78M . I 5 78M A 1 508 5 78M 78M . J 5 78M A 1 509 7 78M 78M . K 5 78M A 1 510 8 78M 78M . L 5 78M A 1 511 9 78M 78M . M 5 78M A 1 512 10 78M 78M . N 5 78M A 1 513 14 78M 78M . O 5 78M A 1 514 15 78M 78M . P 5 78M A 1 515 17 78M 78M . Q 5 78M A 1 516 4 78M 78M . R 5 78M A 1 517 5 78M 78M . S 5 78M A 1 518 9 78M 78M . T 5 78M A 1 519 10 78M 78M . U 5 78M A 1 520 11 78M 78M . V 5 78M A 1 521 2 78M 78M . W 5 78M A 1 522 12 78M 78M . X 5 78M A 1 523 13 78M 78M . Y 5 78M A 1 524 14 78M 78M . Z 6 PE5 A 1 525 18 PE5 PE5 . AA 6 PE5 A 1 526 19 PE5 PE5 . BA 7 HOH A 1 601 26 HOH HOH . BA 7 HOH A 2 602 43 HOH HOH . BA 7 HOH A 3 603 13 HOH HOH . BA 7 HOH A 4 604 31 HOH HOH . BA 7 HOH A 5 605 29 HOH HOH . BA 7 HOH A 6 606 39 HOH HOH . BA 7 HOH A 7 607 30 HOH HOH . BA 7 HOH A 8 608 56 HOH HOH . BA 7 HOH A 9 609 92 HOH HOH . BA 7 HOH A 10 610 11 HOH HOH . BA 7 HOH A 11 611 51 HOH HOH . BA 7 HOH A 12 612 7 HOH HOH . BA 7 HOH A 13 613 93 HOH HOH . BA 7 HOH A 14 614 63 HOH HOH . BA 7 HOH A 15 615 21 HOH HOH . BA 7 HOH A 16 616 32 HOH HOH . BA 7 HOH A 17 617 10 HOH HOH . BA 7 HOH A 18 618 110 HOH HOH . BA 7 HOH A 19 619 40 HOH HOH . BA 7 HOH A 20 620 78 HOH HOH . BA 7 HOH A 21 621 34 HOH HOH . BA 7 HOH A 22 622 100 HOH HOH . BA 7 HOH A 23 623 2 HOH HOH . BA 7 HOH A 24 624 75 HOH HOH . BA 7 HOH A 25 625 109 HOH HOH . BA 7 HOH A 26 626 45 HOH HOH . BA 7 HOH A 27 627 20 HOH HOH . BA 7 HOH A 28 628 89 HOH HOH . BA 7 HOH A 29 629 9 HOH HOH . BA 7 HOH A 30 630 8 HOH HOH . BA 7 HOH A 31 631 16 HOH HOH . BA 7 HOH A 32 632 49 HOH HOH . BA 7 HOH A 33 633 6 HOH HOH . BA 7 HOH A 34 634 36 HOH HOH . BA 7 HOH A 35 635 48 HOH HOH . BA 7 HOH A 36 636 76 HOH HOH . BA 7 HOH A 37 637 17 HOH HOH . BA 7 HOH A 38 638 65 HOH HOH . BA 7 HOH A 39 639 33 HOH HOH . BA 7 HOH A 40 640 19 HOH HOH . BA 7 HOH A 41 641 102 HOH HOH . BA 7 HOH A 42 642 15 HOH HOH . BA 7 HOH A 43 643 24 HOH HOH . BA 7 HOH A 44 644 41 HOH HOH . BA 7 HOH A 45 645 53 HOH HOH . BA 7 HOH A 46 646 12 HOH HOH . BA 7 HOH A 47 647 84 HOH HOH . BA 7 HOH A 48 648 91 HOH HOH . BA 7 HOH A 49 649 112 HOH HOH . BA 7 HOH A 50 650 46 HOH HOH . BA 7 HOH A 51 651 113 HOH HOH . BA 7 HOH A 52 652 82 HOH HOH . BA 7 HOH A 53 653 68 HOH HOH . BA 7 HOH A 54 654 14 HOH HOH . BA 7 HOH A 55 655 72 HOH HOH . BA 7 HOH A 56 656 28 HOH HOH . BA 7 HOH A 57 657 81 HOH HOH . BA 7 HOH A 58 658 114 HOH HOH . BA 7 HOH A 59 659 88 HOH HOH . BA 7 HOH A 60 660 116 HOH HOH . BA 7 HOH A 61 661 73 HOH HOH . BA 7 HOH A 62 662 115 HOH HOH . BA 7 HOH A 63 663 94 HOH HOH . BA 7 HOH A 64 664 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ALA . . . B 2 20.044 15.353 -2.339 0.92 45.33 ? N ALA 501 A 1 HETATM 2 C CA ALA . . . B 2 21.319 16.004 -2.057 0.92 56.02 ? CA ALA 501 A 1 HETATM 3 C C ALA . . . B 2 22.025 16.432 -3.34 0.92 52.92 ? C ALA 501 A 1 HETATM 4 O O ALA . . . B 2 21.837 15.829 -4.398 0.92 61.89 ? O ALA 501 A 1 HETATM 5 C CB ALA . . . B 2 22.214 15.083 -1.244 0.92 47.6 ? CB ALA 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #