data_5D58
#
_model_server_result.job_id            Dp738YYwB20ZaYxJ7M2kpQ 
_model_server_result.datetime_utc      '2024-11-08 09:55:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5D58 
#
_exptl.entry_id    5D58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.189 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENYLALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D58 
_cell.length_a            100.16 
_cell.length_b            109.52 
_cell.length_c            111.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H11 N O2' 
_chem_comp.formula_weight    165.189 
_chem_comp.id                PHE 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PHENYLALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PHE sing 343 n n 
N H PHE sing 344 n n 
N H2 PHE sing 345 n n 
CA C PHE sing 346 n n 
CA CB PHE sing 347 n n 
CA HA PHE sing 348 n n 
C O PHE doub 349 n n 
C OXT PHE sing 350 n n 
CB CG PHE sing 351 n n 
CB HB2 PHE sing 352 n n 
CB HB3 PHE sing 353 n n 
CG CD1 PHE doub 354 n y 
CG CD2 PHE sing 355 n y 
CD1 CE1 PHE sing 356 n y 
CD1 HD1 PHE sing 357 n n 
CD2 CE2 PHE doub 358 n y 
CD2 HD2 PHE sing 359 n n 
CE1 CZ PHE doub 360 n y 
CE1 HE1 PHE sing 361 n n 
CE2 CZ PHE sing 362 n y 
CE2 HE2 PHE sing 363 n n 
CZ HZ PHE sing 364 n n 
OXT HXT PHE sing 365 n n 
#
_atom_sites.entry_id                     5D58 
_atom_sites.fract_transf_matrix[1][1]    0.009984 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009131 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ALA A 1 501 32 ALA ALA . 
C 3 PHE A 1 502 33 PHE PHE . 
D 4 PO4 A 1 503 19 PO4 PO4 . 
E 5 78M A 1 504 1 78M 78M . 
F 5 78M A 1 505 2 78M 78M . 
G 5 78M A 1 506 3 78M 78M . 
H 5 78M A 1 507 4 78M 78M . 
I 5 78M A 1 508 5 78M 78M . 
J 5 78M A 1 509 7 78M 78M . 
K 5 78M A 1 510 8 78M 78M . 
L 5 78M A 1 511 9 78M 78M . 
M 5 78M A 1 512 10 78M 78M . 
N 5 78M A 1 513 14 78M 78M . 
O 5 78M A 1 514 15 78M 78M . 
P 5 78M A 1 515 17 78M 78M . 
Q 5 78M A 1 516 4 78M 78M . 
R 5 78M A 1 517 5 78M 78M . 
S 5 78M A 1 518 9 78M 78M . 
T 5 78M A 1 519 10 78M 78M . 
U 5 78M A 1 520 11 78M 78M . 
V 5 78M A 1 521 2 78M 78M . 
W 5 78M A 1 522 12 78M 78M . 
X 5 78M A 1 523 13 78M 78M . 
Y 5 78M A 1 524 14 78M 78M . 
Z 6 PE5 A 1 525 18 PE5 PE5 . 
AA 6 PE5 A 1 526 19 PE5 PE5 . 
BA 7 HOH A 1 601 26 HOH HOH . 
BA 7 HOH A 2 602 43 HOH HOH . 
BA 7 HOH A 3 603 13 HOH HOH . 
BA 7 HOH A 4 604 31 HOH HOH . 
BA 7 HOH A 5 605 29 HOH HOH . 
BA 7 HOH A 6 606 39 HOH HOH . 
BA 7 HOH A 7 607 30 HOH HOH . 
BA 7 HOH A 8 608 56 HOH HOH . 
BA 7 HOH A 9 609 92 HOH HOH . 
BA 7 HOH A 10 610 11 HOH HOH . 
BA 7 HOH A 11 611 51 HOH HOH . 
BA 7 HOH A 12 612 7 HOH HOH . 
BA 7 HOH A 13 613 93 HOH HOH . 
BA 7 HOH A 14 614 63 HOH HOH . 
BA 7 HOH A 15 615 21 HOH HOH . 
BA 7 HOH A 16 616 32 HOH HOH . 
BA 7 HOH A 17 617 10 HOH HOH . 
BA 7 HOH A 18 618 110 HOH HOH . 
BA 7 HOH A 19 619 40 HOH HOH . 
BA 7 HOH A 20 620 78 HOH HOH . 
BA 7 HOH A 21 621 34 HOH HOH . 
BA 7 HOH A 22 622 100 HOH HOH . 
BA 7 HOH A 23 623 2 HOH HOH . 
BA 7 HOH A 24 624 75 HOH HOH . 
BA 7 HOH A 25 625 109 HOH HOH . 
BA 7 HOH A 26 626 45 HOH HOH . 
BA 7 HOH A 27 627 20 HOH HOH . 
BA 7 HOH A 28 628 89 HOH HOH . 
BA 7 HOH A 29 629 9 HOH HOH . 
BA 7 HOH A 30 630 8 HOH HOH . 
BA 7 HOH A 31 631 16 HOH HOH . 
BA 7 HOH A 32 632 49 HOH HOH . 
BA 7 HOH A 33 633 6 HOH HOH . 
BA 7 HOH A 34 634 36 HOH HOH . 
BA 7 HOH A 35 635 48 HOH HOH . 
BA 7 HOH A 36 636 76 HOH HOH . 
BA 7 HOH A 37 637 17 HOH HOH . 
BA 7 HOH A 38 638 65 HOH HOH . 
BA 7 HOH A 39 639 33 HOH HOH . 
BA 7 HOH A 40 640 19 HOH HOH . 
BA 7 HOH A 41 641 102 HOH HOH . 
BA 7 HOH A 42 642 15 HOH HOH . 
BA 7 HOH A 43 643 24 HOH HOH . 
BA 7 HOH A 44 644 41 HOH HOH . 
BA 7 HOH A 45 645 53 HOH HOH . 
BA 7 HOH A 46 646 12 HOH HOH . 
BA 7 HOH A 47 647 84 HOH HOH . 
BA 7 HOH A 48 648 91 HOH HOH . 
BA 7 HOH A 49 649 112 HOH HOH . 
BA 7 HOH A 50 650 46 HOH HOH . 
BA 7 HOH A 51 651 113 HOH HOH . 
BA 7 HOH A 52 652 82 HOH HOH . 
BA 7 HOH A 53 653 68 HOH HOH . 
BA 7 HOH A 54 654 14 HOH HOH . 
BA 7 HOH A 55 655 72 HOH HOH . 
BA 7 HOH A 56 656 28 HOH HOH . 
BA 7 HOH A 57 657 81 HOH HOH . 
BA 7 HOH A 58 658 114 HOH HOH . 
BA 7 HOH A 59 659 88 HOH HOH . 
BA 7 HOH A 60 660 116 HOH HOH . 
BA 7 HOH A 61 661 73 HOH HOH . 
BA 7 HOH A 62 662 115 HOH HOH . 
BA 7 HOH A 63 663 94 HOH HOH . 
BA 7 HOH A 64 664 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PHE . . . C 3 22.841 17.474 -3.229 0.83 50.19 ? N PHE 502 A 1 
HETATM 2 C CA PHE . . . C 3 23.549 18.049 -4.366 0.83 48.36 ? CA PHE 502 A 1 
HETATM 3 C C PHE . . . C 3 24.69 17.147 -4.832 0.83 65.92 ? C PHE 502 A 1 
HETATM 4 O O PHE . . . C 3 25.039 17.117 -6.012 0.83 50.83 ? O PHE 502 A 1 
HETATM 5 C CB PHE . . . C 3 24.087 19.432 -3.991 0.83 50.13 ? CB PHE 502 A 1 
HETATM 6 C CG PHE . . . C 3 24.522 20.261 -5.162 0.83 60.71 ? CG PHE 502 A 1 
HETATM 7 C CD1 PHE . . . C 3 25.809 20.156 -5.664 0.83 66.74 ? CD1 PHE 502 A 1 
HETATM 8 C CD2 PHE . . . C 3 23.649 21.164 -5.748 0.83 66.27 ? CD2 PHE 502 A 1 
HETATM 9 C CE1 PHE . . . C 3 26.214 20.929 -6.74 0.83 70.83 ? CE1 PHE 502 A 1 
HETATM 10 C CE2 PHE . . . C 3 24.048 21.94 -6.822 0.83 71.59 ? CE2 PHE 502 A 1 
HETATM 11 C CZ PHE . . . C 3 25.331 21.823 -7.319 0.83 64.69 ? CZ PHE 502 A 1 
HETATM 12 O OXT PHE . . . C 3 25.293 16.425 -4.038 0.83 56.93 -1 OXT PHE 502 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#