data_5D59
#
_model_server_result.job_id            G-GdBtqcf3NrwM2Am1WNBw 
_model_server_result.datetime_utc      '2024-11-08 13:00:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5D59 
#
_exptl.entry_id    5D59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.189 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENYLALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D59 
_cell.length_a            101.57 
_cell.length_b            110.25 
_cell.length_c            110.34 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H11 N O2' 
_chem_comp.formula_weight    165.189 
_chem_comp.id                PHE 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PHENYLALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PHE sing 343 n n 
N H PHE sing 344 n n 
N H2 PHE sing 345 n n 
CA C PHE sing 346 n n 
CA CB PHE sing 347 n n 
CA HA PHE sing 348 n n 
C O PHE doub 349 n n 
C OXT PHE sing 350 n n 
CB CG PHE sing 351 n n 
CB HB2 PHE sing 352 n n 
CB HB3 PHE sing 353 n n 
CG CD1 PHE doub 354 n y 
CG CD2 PHE sing 355 n y 
CD1 CE1 PHE sing 356 n y 
CD1 HD1 PHE sing 357 n n 
CD2 CE2 PHE doub 358 n y 
CD2 HD2 PHE sing 359 n n 
CE1 CZ PHE doub 360 n y 
CE1 HE1 PHE sing 361 n n 
CE2 CZ PHE sing 362 n y 
CE2 HE2 PHE sing 363 n n 
CZ HZ PHE sing 364 n n 
OXT HXT PHE sing 365 n n 
#
_atom_sites.entry_id                     5D59 
_atom_sites.fract_transf_matrix[1][1]    0.009845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ALA A 1 501 32 ALA ALA . 
C 3 PHE A 1 502 33 PHE PHE . 
D 4 78M A 1 503 1 78M 78M . 
E 4 78M A 1 504 2 78M 78M . 
F 4 78M A 1 505 3 78M 78M . 
G 4 78M A 1 506 4 78M 78M . 
H 4 78M A 1 507 5 78M 78M . 
I 4 78M A 1 508 7 78M 78M . 
J 4 78M A 1 509 8 78M 78M . 
K 4 78M A 1 510 9 78M 78M . 
L 4 78M A 1 511 10 78M 78M . 
M 4 78M A 1 512 14 78M 78M . 
N 4 78M A 1 513 15 78M 78M . 
O 4 78M A 1 514 16 78M 78M . 
P 4 78M A 1 515 17 78M 78M . 
Q 5 PO4 A 1 516 19 PO4 PO4 . 
R 4 78M A 1 517 2 78M 78M . 
S 4 78M A 1 518 4 78M 78M . 
T 4 78M A 1 519 5 78M 78M . 
U 4 78M A 1 520 6 78M 78M . 
V 4 78M A 1 521 9 78M 78M . 
W 4 78M A 1 522 10 78M 78M . 
X 4 78M A 1 523 11 78M 78M . 
Y 4 78M A 1 524 13 78M 78M . 
Z 6 PE5 A 1 525 18 PE5 PE5 . 
AA 6 PE5 A 1 526 19 PE5 PE5 . 
BA 7 HOH A 1 601 100 HOH HOH . 
BA 7 HOH A 2 602 126 HOH HOH . 
BA 7 HOH A 3 603 67 HOH HOH . 
BA 7 HOH A 4 604 2 HOH HOH . 
BA 7 HOH A 5 605 20 HOH HOH . 
BA 7 HOH A 6 606 5 HOH HOH . 
BA 7 HOH A 7 607 114 HOH HOH . 
BA 7 HOH A 8 608 35 HOH HOH . 
BA 7 HOH A 9 609 108 HOH HOH . 
BA 7 HOH A 10 610 41 HOH HOH . 
BA 7 HOH A 11 611 105 HOH HOH . 
BA 7 HOH A 12 612 125 HOH HOH . 
BA 7 HOH A 13 613 124 HOH HOH . 
BA 7 HOH A 14 614 1 HOH HOH . 
BA 7 HOH A 15 615 36 HOH HOH . 
BA 7 HOH A 16 616 8 HOH HOH . 
BA 7 HOH A 17 617 18 HOH HOH . 
BA 7 HOH A 18 618 39 HOH HOH . 
BA 7 HOH A 19 619 43 HOH HOH . 
BA 7 HOH A 20 620 123 HOH HOH . 
BA 7 HOH A 21 621 97 HOH HOH . 
BA 7 HOH A 22 622 117 HOH HOH . 
BA 7 HOH A 23 623 122 HOH HOH . 
BA 7 HOH A 24 624 6 HOH HOH . 
BA 7 HOH A 25 625 110 HOH HOH . 
BA 7 HOH A 26 626 7 HOH HOH . 
BA 7 HOH A 27 627 31 HOH HOH . 
BA 7 HOH A 28 628 13 HOH HOH . 
BA 7 HOH A 29 629 10 HOH HOH . 
BA 7 HOH A 30 630 103 HOH HOH . 
BA 7 HOH A 31 631 50 HOH HOH . 
BA 7 HOH A 32 632 58 HOH HOH . 
BA 7 HOH A 33 633 106 HOH HOH . 
BA 7 HOH A 34 634 76 HOH HOH . 
BA 7 HOH A 35 635 26 HOH HOH . 
BA 7 HOH A 36 636 16 HOH HOH . 
BA 7 HOH A 37 637 45 HOH HOH . 
BA 7 HOH A 38 638 3 HOH HOH . 
BA 7 HOH A 39 639 119 HOH HOH . 
BA 7 HOH A 40 640 9 HOH HOH . 
BA 7 HOH A 41 641 21 HOH HOH . 
BA 7 HOH A 42 642 37 HOH HOH . 
BA 7 HOH A 43 643 30 HOH HOH . 
BA 7 HOH A 44 644 12 HOH HOH . 
BA 7 HOH A 45 645 112 HOH HOH . 
BA 7 HOH A 46 646 65 HOH HOH . 
BA 7 HOH A 47 647 128 HOH HOH . 
BA 7 HOH A 48 648 62 HOH HOH . 
BA 7 HOH A 49 649 98 HOH HOH . 
BA 7 HOH A 50 650 118 HOH HOH . 
BA 7 HOH A 51 651 55 HOH HOH . 
BA 7 HOH A 52 652 59 HOH HOH . 
BA 7 HOH A 53 653 15 HOH HOH . 
BA 7 HOH A 54 654 57 HOH HOH . 
BA 7 HOH A 55 655 53 HOH HOH . 
BA 7 HOH A 56 656 33 HOH HOH . 
BA 7 HOH A 57 657 101 HOH HOH . 
BA 7 HOH A 58 658 51 HOH HOH . 
BA 7 HOH A 59 659 46 HOH HOH . 
BA 7 HOH A 60 660 27 HOH HOH . 
BA 7 HOH A 61 661 120 HOH HOH . 
BA 7 HOH A 62 662 64 HOH HOH . 
BA 7 HOH A 63 663 34 HOH HOH . 
BA 7 HOH A 64 664 54 HOH HOH . 
BA 7 HOH A 65 665 42 HOH HOH . 
BA 7 HOH A 66 666 94 HOH HOH . 
BA 7 HOH A 67 667 129 HOH HOH . 
BA 7 HOH A 68 668 85 HOH HOH . 
BA 7 HOH A 69 669 96 HOH HOH . 
BA 7 HOH A 70 670 104 HOH HOH . 
BA 7 HOH A 71 671 102 HOH HOH . 
BA 7 HOH A 72 672 78 HOH HOH . 
BA 7 HOH A 73 673 113 HOH HOH . 
BA 7 HOH A 74 674 115 HOH HOH . 
BA 7 HOH A 75 675 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PHE . . . C 3 22.951 17.369 -3.289 0.88 45.71 ? N PHE 502 A 1 
HETATM 2 C CA PHE . . . C 3 23.629 17.949 -4.445 0.88 46.98 ? CA PHE 502 A 1 
HETATM 3 C C PHE . . . C 3 24.713 17.032 -5.017 0.88 52.12 ? C PHE 502 A 1 
HETATM 4 O O PHE . . . C 3 24.968 17.026 -6.225 0.88 53.96 ? O PHE 502 A 1 
HETATM 5 C CB PHE . . . C 3 24.239 19.298 -4.06 0.88 53.63 ? CB PHE 502 A 1 
HETATM 6 C CG PHE . . . C 3 24.804 20.065 -5.219 0.88 57.51 ? CG PHE 502 A 1 
HETATM 7 C CD1 PHE . . . C 3 23.992 20.882 -5.991 0.88 61.36 ? CD1 PHE 502 A 1 
HETATM 8 C CD2 PHE . . . C 3 26.151 19.982 -5.529 0.88 60.45 ? CD2 PHE 502 A 1 
HETATM 9 C CE1 PHE . . . C 3 24.517 21.597 -7.058 0.88 67.15 ? CE1 PHE 502 A 1 
HETATM 10 C CE2 PHE . . . C 3 26.68 20.692 -6.593 0.88 63.87 ? CE2 PHE 502 A 1 
HETATM 11 C CZ PHE . . . C 3 25.862 21.5 -7.359 0.88 61.44 ? CZ PHE 502 A 1 
HETATM 12 O OXT PHE . . . C 3 25.368 16.281 -4.289 0.88 44 -1 OXT PHE 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#