data_5D59
#
_model_server_result.job_id            jOffVlMzYyJE1nMZSe9qtA 
_model_server_result.datetime_utc      '2024-11-08 12:43:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5D59 
#
_exptl.entry_id    5D59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D59 
_cell.length_a            101.57 
_cell.length_b            110.25 
_cell.length_c            110.34 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5D59 
_atom_sites.fract_transf_matrix[1][1]    0.009845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ALA A 1 501 32 ALA ALA . 
C 3 PHE A 1 502 33 PHE PHE . 
D 4 78M A 1 503 1 78M 78M . 
E 4 78M A 1 504 2 78M 78M . 
F 4 78M A 1 505 3 78M 78M . 
G 4 78M A 1 506 4 78M 78M . 
H 4 78M A 1 507 5 78M 78M . 
I 4 78M A 1 508 7 78M 78M . 
J 4 78M A 1 509 8 78M 78M . 
K 4 78M A 1 510 9 78M 78M . 
L 4 78M A 1 511 10 78M 78M . 
M 4 78M A 1 512 14 78M 78M . 
N 4 78M A 1 513 15 78M 78M . 
O 4 78M A 1 514 16 78M 78M . 
P 4 78M A 1 515 17 78M 78M . 
Q 5 PO4 A 1 516 19 PO4 PO4 . 
R 4 78M A 1 517 2 78M 78M . 
S 4 78M A 1 518 4 78M 78M . 
T 4 78M A 1 519 5 78M 78M . 
U 4 78M A 1 520 6 78M 78M . 
V 4 78M A 1 521 9 78M 78M . 
W 4 78M A 1 522 10 78M 78M . 
X 4 78M A 1 523 11 78M 78M . 
Y 4 78M A 1 524 13 78M 78M . 
Z 6 PE5 A 1 525 18 PE5 PE5 . 
AA 6 PE5 A 1 526 19 PE5 PE5 . 
BA 7 HOH A 1 601 100 HOH HOH . 
BA 7 HOH A 2 602 126 HOH HOH . 
BA 7 HOH A 3 603 67 HOH HOH . 
BA 7 HOH A 4 604 2 HOH HOH . 
BA 7 HOH A 5 605 20 HOH HOH . 
BA 7 HOH A 6 606 5 HOH HOH . 
BA 7 HOH A 7 607 114 HOH HOH . 
BA 7 HOH A 8 608 35 HOH HOH . 
BA 7 HOH A 9 609 108 HOH HOH . 
BA 7 HOH A 10 610 41 HOH HOH . 
BA 7 HOH A 11 611 105 HOH HOH . 
BA 7 HOH A 12 612 125 HOH HOH . 
BA 7 HOH A 13 613 124 HOH HOH . 
BA 7 HOH A 14 614 1 HOH HOH . 
BA 7 HOH A 15 615 36 HOH HOH . 
BA 7 HOH A 16 616 8 HOH HOH . 
BA 7 HOH A 17 617 18 HOH HOH . 
BA 7 HOH A 18 618 39 HOH HOH . 
BA 7 HOH A 19 619 43 HOH HOH . 
BA 7 HOH A 20 620 123 HOH HOH . 
BA 7 HOH A 21 621 97 HOH HOH . 
BA 7 HOH A 22 622 117 HOH HOH . 
BA 7 HOH A 23 623 122 HOH HOH . 
BA 7 HOH A 24 624 6 HOH HOH . 
BA 7 HOH A 25 625 110 HOH HOH . 
BA 7 HOH A 26 626 7 HOH HOH . 
BA 7 HOH A 27 627 31 HOH HOH . 
BA 7 HOH A 28 628 13 HOH HOH . 
BA 7 HOH A 29 629 10 HOH HOH . 
BA 7 HOH A 30 630 103 HOH HOH . 
BA 7 HOH A 31 631 50 HOH HOH . 
BA 7 HOH A 32 632 58 HOH HOH . 
BA 7 HOH A 33 633 106 HOH HOH . 
BA 7 HOH A 34 634 76 HOH HOH . 
BA 7 HOH A 35 635 26 HOH HOH . 
BA 7 HOH A 36 636 16 HOH HOH . 
BA 7 HOH A 37 637 45 HOH HOH . 
BA 7 HOH A 38 638 3 HOH HOH . 
BA 7 HOH A 39 639 119 HOH HOH . 
BA 7 HOH A 40 640 9 HOH HOH . 
BA 7 HOH A 41 641 21 HOH HOH . 
BA 7 HOH A 42 642 37 HOH HOH . 
BA 7 HOH A 43 643 30 HOH HOH . 
BA 7 HOH A 44 644 12 HOH HOH . 
BA 7 HOH A 45 645 112 HOH HOH . 
BA 7 HOH A 46 646 65 HOH HOH . 
BA 7 HOH A 47 647 128 HOH HOH . 
BA 7 HOH A 48 648 62 HOH HOH . 
BA 7 HOH A 49 649 98 HOH HOH . 
BA 7 HOH A 50 650 118 HOH HOH . 
BA 7 HOH A 51 651 55 HOH HOH . 
BA 7 HOH A 52 652 59 HOH HOH . 
BA 7 HOH A 53 653 15 HOH HOH . 
BA 7 HOH A 54 654 57 HOH HOH . 
BA 7 HOH A 55 655 53 HOH HOH . 
BA 7 HOH A 56 656 33 HOH HOH . 
BA 7 HOH A 57 657 101 HOH HOH . 
BA 7 HOH A 58 658 51 HOH HOH . 
BA 7 HOH A 59 659 46 HOH HOH . 
BA 7 HOH A 60 660 27 HOH HOH . 
BA 7 HOH A 61 661 120 HOH HOH . 
BA 7 HOH A 62 662 64 HOH HOH . 
BA 7 HOH A 63 663 34 HOH HOH . 
BA 7 HOH A 64 664 54 HOH HOH . 
BA 7 HOH A 65 665 42 HOH HOH . 
BA 7 HOH A 66 666 94 HOH HOH . 
BA 7 HOH A 67 667 129 HOH HOH . 
BA 7 HOH A 68 668 85 HOH HOH . 
BA 7 HOH A 69 669 96 HOH HOH . 
BA 7 HOH A 70 670 104 HOH HOH . 
BA 7 HOH A 71 671 102 HOH HOH . 
BA 7 HOH A 72 672 78 HOH HOH . 
BA 7 HOH A 73 673 113 HOH HOH . 
BA 7 HOH A 74 674 115 HOH HOH . 
BA 7 HOH A 75 675 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . D 4 36.205 40.656 14.054 0.9 63.5 ? O21 78M 503 A 1 
HETATM 2 C C20 78M . . . D 4 36.674 41.066 12.79 0.9 62.92 ? C20 78M 503 A 1 
HETATM 3 C C18 78M . . . D 4 35.495 41.201 11.856 0.9 63.25 ? C18 78M 503 A 1 
HETATM 4 O O19 78M . . . D 4 35.085 39.924 11.431 0.9 69.11 ? O19 78M 503 A 1 
HETATM 5 C C17 78M . . . D 4 35.9 42.003 10.645 0.9 62.84 ? C17 78M 503 A 1 
HETATM 6 O O2 78M . . . D 4 35.236 41.486 9.516 0.9 67.19 ? O2 78M 503 A 1 
HETATM 7 C C1 78M . . . D 4 36.031 41.537 8.36 0.9 60.6 ? C1 78M 503 A 1 
HETATM 8 O O1 78M . . . D 4 37.19 41.186 8.414 0.9 68.73 ? O1 78M 503 A 1 
HETATM 9 C C2 78M . . . D 4 35.457 42.042 7.06 0.9 66.06 ? C2 78M 503 A 1 
HETATM 10 C C3 78M . . . D 4 35.264 40.889 6.099 0.9 58.14 ? C3 78M 503 A 1 
HETATM 11 C C4 78M . . . D 4 36.582 40.513 5.461 0.9 53.19 ? C4 78M 503 A 1 
HETATM 12 C C5 78M . . . D 4 37.247 41.74 4.879 0.9 55.55 ? C5 78M 503 A 1 
HETATM 13 C C6 78M . . . D 4 36.463 42.225 3.683 0.9 52.59 ? C6 78M 503 A 1 
HETATM 14 C C7 78M . . . D 4 36.758 43.691 3.464 0.9 68.69 ? C7 78M 503 A 1 
HETATM 15 C C8 78M . . . D 4 36.698 44.197 2.219 0.9 74.07 ? C8 78M 503 A 1 
HETATM 16 C C9 78M . . . D 4 36.335 43.296 1.057 0.9 68.71 ? C9 78M 503 A 1 
HETATM 17 C C10 78M . . . D 4 36.946 43.834 -0.219 0.9 74.15 ? C10 78M 503 A 1 
HETATM 18 C C11 78M . . . D 4 36.722 45.329 -0.307 0.9 77.97 ? C11 78M 503 A 1 
HETATM 19 C C12 78M . . . D 4 37.535 45.907 -1.446 0.9 76.36 ? C12 78M 503 A 1 
HETATM 20 C C13 78M . . . D 4 38.963 46.137 -0.994 0.9 70.47 ? C13 78M 503 A 1 
HETATM 21 C C15 78M . . . D 4 40.191 46.756 1.062 0.9 63.66 ? C15 78M 503 A 1 
HETATM 22 C C14 78M . . . D 4 38.984 47.066 0.202 0.9 63.18 ? C14 78M 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#