data_5D59 # _model_server_result.job_id DklODI3CgQ43iLFSGCol-Q _model_server_result.datetime_utc '2024-11-08 12:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":525}' # _entry.id 5D59 # _exptl.entry_id 5D59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D59 _cell.length_a 101.57 _cell.length_b 110.25 _cell.length_c 110.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Z N N ? 6 AA N N # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 279 n n C48 H481 PE5 sing 280 n n C48 H482 PE5 sing 281 n n C48 H483 PE5 sing 282 n n C50 O1 PE5 sing 283 n n C50 H501 PE5 sing 284 n n C50 H502 PE5 sing 285 n n O1 C1 PE5 sing 286 n n C1 C2 PE5 sing 287 n n C1 H11 PE5 sing 288 n n C1 H12 PE5 sing 289 n n C2 O2 PE5 sing 290 n n C2 H21 PE5 sing 291 n n C2 H22 PE5 sing 292 n n O2 C3 PE5 sing 293 n n C3 C4 PE5 sing 294 n n C3 H31 PE5 sing 295 n n C3 H32 PE5 sing 296 n n C4 O3 PE5 sing 297 n n C4 H41 PE5 sing 298 n n C4 H42 PE5 sing 299 n n O3 C5 PE5 sing 300 n n C5 C6 PE5 sing 301 n n C5 H51 PE5 sing 302 n n C5 H52A PE5 sing 303 n n C6 O4 PE5 sing 304 n n C6 H61 PE5 sing 305 n n C6 H62 PE5 sing 306 n n O4 C7 PE5 sing 307 n n C7 C8 PE5 sing 308 n n C7 H71 PE5 sing 309 n n C7 H72 PE5 sing 310 n n C8 O5 PE5 sing 311 n n C8 H81 PE5 sing 312 n n C8 H82 PE5 sing 313 n n O5 C9 PE5 sing 314 n n C9 C10 PE5 sing 315 n n C9 H91 PE5 sing 316 n n C9 H92 PE5 sing 317 n n C10 O6 PE5 sing 318 n n C10 H101 PE5 sing 319 n n C10 H102 PE5 sing 320 n n O6 C11 PE5 sing 321 n n C11 C12 PE5 sing 322 n n C11 H111 PE5 sing 323 n n C11 H112 PE5 sing 324 n n C12 O7 PE5 sing 325 n n C12 H121 PE5 sing 326 n n C12 H122 PE5 sing 327 n n O7 C13 PE5 sing 328 n n C13 C14 PE5 sing 329 n n C13 H131 PE5 sing 330 n n C13 H132 PE5 sing 331 n n C14 O8 PE5 sing 332 n n C14 H141 PE5 sing 333 n n C14 H142 PE5 sing 334 n n O8 C15 PE5 sing 335 n n C15 C16 PE5 sing 336 n n C15 H151 PE5 sing 337 n n C15 H152 PE5 sing 338 n n C16 O52 PE5 sing 339 n n C16 H161 PE5 sing 340 n n C16 H162 PE5 sing 341 n n O52 H52 PE5 sing 342 n n # _atom_sites.entry_id 5D59 _atom_sites.fract_transf_matrix[1][1] 0.009845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 501 32 ALA ALA . C 3 PHE A 1 502 33 PHE PHE . D 4 78M A 1 503 1 78M 78M . E 4 78M A 1 504 2 78M 78M . F 4 78M A 1 505 3 78M 78M . G 4 78M A 1 506 4 78M 78M . H 4 78M A 1 507 5 78M 78M . I 4 78M A 1 508 7 78M 78M . J 4 78M A 1 509 8 78M 78M . K 4 78M A 1 510 9 78M 78M . L 4 78M A 1 511 10 78M 78M . M 4 78M A 1 512 14 78M 78M . N 4 78M A 1 513 15 78M 78M . O 4 78M A 1 514 16 78M 78M . P 4 78M A 1 515 17 78M 78M . Q 5 PO4 A 1 516 19 PO4 PO4 . R 4 78M A 1 517 2 78M 78M . S 4 78M A 1 518 4 78M 78M . T 4 78M A 1 519 5 78M 78M . U 4 78M A 1 520 6 78M 78M . V 4 78M A 1 521 9 78M 78M . W 4 78M A 1 522 10 78M 78M . X 4 78M A 1 523 11 78M 78M . Y 4 78M A 1 524 13 78M 78M . Z 6 PE5 A 1 525 18 PE5 PE5 . AA 6 PE5 A 1 526 19 PE5 PE5 . BA 7 HOH A 1 601 100 HOH HOH . BA 7 HOH A 2 602 126 HOH HOH . BA 7 HOH A 3 603 67 HOH HOH . BA 7 HOH A 4 604 2 HOH HOH . BA 7 HOH A 5 605 20 HOH HOH . BA 7 HOH A 6 606 5 HOH HOH . BA 7 HOH A 7 607 114 HOH HOH . BA 7 HOH A 8 608 35 HOH HOH . BA 7 HOH A 9 609 108 HOH HOH . BA 7 HOH A 10 610 41 HOH HOH . BA 7 HOH A 11 611 105 HOH HOH . BA 7 HOH A 12 612 125 HOH HOH . BA 7 HOH A 13 613 124 HOH HOH . BA 7 HOH A 14 614 1 HOH HOH . BA 7 HOH A 15 615 36 HOH HOH . BA 7 HOH A 16 616 8 HOH HOH . BA 7 HOH A 17 617 18 HOH HOH . BA 7 HOH A 18 618 39 HOH HOH . BA 7 HOH A 19 619 43 HOH HOH . BA 7 HOH A 20 620 123 HOH HOH . BA 7 HOH A 21 621 97 HOH HOH . BA 7 HOH A 22 622 117 HOH HOH . BA 7 HOH A 23 623 122 HOH HOH . BA 7 HOH A 24 624 6 HOH HOH . BA 7 HOH A 25 625 110 HOH HOH . BA 7 HOH A 26 626 7 HOH HOH . BA 7 HOH A 27 627 31 HOH HOH . BA 7 HOH A 28 628 13 HOH HOH . BA 7 HOH A 29 629 10 HOH HOH . BA 7 HOH A 30 630 103 HOH HOH . BA 7 HOH A 31 631 50 HOH HOH . BA 7 HOH A 32 632 58 HOH HOH . BA 7 HOH A 33 633 106 HOH HOH . BA 7 HOH A 34 634 76 HOH HOH . BA 7 HOH A 35 635 26 HOH HOH . BA 7 HOH A 36 636 16 HOH HOH . BA 7 HOH A 37 637 45 HOH HOH . BA 7 HOH A 38 638 3 HOH HOH . BA 7 HOH A 39 639 119 HOH HOH . BA 7 HOH A 40 640 9 HOH HOH . BA 7 HOH A 41 641 21 HOH HOH . BA 7 HOH A 42 642 37 HOH HOH . BA 7 HOH A 43 643 30 HOH HOH . BA 7 HOH A 44 644 12 HOH HOH . BA 7 HOH A 45 645 112 HOH HOH . BA 7 HOH A 46 646 65 HOH HOH . BA 7 HOH A 47 647 128 HOH HOH . BA 7 HOH A 48 648 62 HOH HOH . BA 7 HOH A 49 649 98 HOH HOH . BA 7 HOH A 50 650 118 HOH HOH . BA 7 HOH A 51 651 55 HOH HOH . BA 7 HOH A 52 652 59 HOH HOH . BA 7 HOH A 53 653 15 HOH HOH . BA 7 HOH A 54 654 57 HOH HOH . BA 7 HOH A 55 655 53 HOH HOH . BA 7 HOH A 56 656 33 HOH HOH . BA 7 HOH A 57 657 101 HOH HOH . BA 7 HOH A 58 658 51 HOH HOH . BA 7 HOH A 59 659 46 HOH HOH . BA 7 HOH A 60 660 27 HOH HOH . BA 7 HOH A 61 661 120 HOH HOH . BA 7 HOH A 62 662 64 HOH HOH . BA 7 HOH A 63 663 34 HOH HOH . BA 7 HOH A 64 664 54 HOH HOH . BA 7 HOH A 65 665 42 HOH HOH . BA 7 HOH A 66 666 94 HOH HOH . BA 7 HOH A 67 667 129 HOH HOH . BA 7 HOH A 68 668 85 HOH HOH . BA 7 HOH A 69 669 96 HOH HOH . BA 7 HOH A 70 670 104 HOH HOH . BA 7 HOH A 71 671 102 HOH HOH . BA 7 HOH A 72 672 78 HOH HOH . BA 7 HOH A 73 673 113 HOH HOH . BA 7 HOH A 74 674 115 HOH HOH . BA 7 HOH A 75 675 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 PE5 . . . Z 6 36.674 8.727 18.391 1 76.95 ? O5 PE5 525 A 1 HETATM 2 C C9 PE5 . . . Z 6 37.983 9.119 17.941 1 61.77 ? C9 PE5 525 A 1 HETATM 3 C C10 PE5 . . . Z 6 38.733 7.857 17.414 1 69.93 ? C10 PE5 525 A 1 HETATM 4 O O6 PE5 . . . Z 6 39.991 8.201 16.813 1 70.58 ? O6 PE5 525 A 1 HETATM 5 C C11 PE5 . . . Z 6 41.075 8.324 17.783 1 70.4 ? C11 PE5 525 A 1 HETATM 6 C C12 PE5 . . . Z 6 40.955 7.242 18.859 1 73.74 ? C12 PE5 525 A 1 HETATM 7 O O7 PE5 . . . Z 6 40.763 7.81 20.14 1 85.24 ? O7 PE5 525 A 1 HETATM 8 C C13 PE5 . . . Z 6 41.492 7.147 21.171 1 74.65 ? C13 PE5 525 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #