data_5D5A # _model_server_result.job_id htSxPbCEFraCJ2Uy4jeJHg _model_server_result.datetime_utc '2024-11-27 13:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5D5A # _exptl.entry_id 5D5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 5D5A _cell.length_a 107 _cell.length_b 170 _cell.length_c 40.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 401 MAL 2 n B GLC 2 B 2 GLC B 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 F C2 ACM . A ACM 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 J C1 PLM . A PLM 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 188 n n C1 O5 BU1 sing 189 n n C1 H11 BU1 sing 190 n n C1 H12 BU1 sing 191 n n C2 C3 BU1 sing 192 n n C2 H21 BU1 sing 193 n n C2 H22 BU1 sing 194 n n C3 C4 BU1 sing 195 n n C3 H31 BU1 sing 196 n n C3 H32 BU1 sing 197 n n C4 O6 BU1 sing 198 n n C4 H41 BU1 sing 199 n n C4 H42 BU1 sing 200 n n O5 HO5 BU1 sing 201 n n O6 HO6 BU1 sing 202 n n # _atom_sites.entry_id 5D5A _atom_sites.fract_transf_matrix[1][1] 0.009346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CAU A 1 1202 408 CAU CAU . D 4 BU1 A 1 1203 409 BU1 BU1 . E 4 BU1 A 1 1204 410 BU1 BU1 . F 5 ACM A 1 1205 411 ACM ACM . G 6 CLR A 1 1206 412 CLR CLR . H 6 CLR A 1 1207 413 CLR CLR . I 6 CLR A 1 1208 414 CLR CLR . J 7 PLM A 1 1209 415 PLM PLM . K 8 12P A 1 1210 416 12P 12P . L 9 SO4 A 1 1211 402 SO4 SO4 . M 9 SO4 A 1 1212 403 SO4 SO4 . N 9 SO4 A 1 1213 404 SO4 SO4 . O 9 SO4 A 1 1214 405 SO4 SO4 . P 9 SO4 A 1 1215 406 SO4 SO4 . Q 9 SO4 A 1 1216 407 SO4 SO4 . R 10 HOH A 1 1301 2 HOH HOH . R 10 HOH A 2 1302 1 HOH HOH . R 10 HOH A 3 1303 14 HOH HOH . R 10 HOH A 4 1304 41 HOH HOH . R 10 HOH A 5 1305 44 HOH HOH . R 10 HOH A 6 1306 63 HOH HOH . R 10 HOH A 7 1307 37 HOH HOH . R 10 HOH A 8 1308 58 HOH HOH . R 10 HOH A 9 1309 66 HOH HOH . R 10 HOH A 10 1310 59 HOH HOH . R 10 HOH A 11 1311 57 HOH HOH . R 10 HOH A 12 1312 50 HOH HOH . R 10 HOH A 13 1313 17 HOH HOH . R 10 HOH A 14 1314 508 HOH HOH . R 10 HOH A 15 1315 507 HOH HOH . R 10 HOH A 16 1316 9 HOH HOH . R 10 HOH A 17 1317 33 HOH HOH . R 10 HOH A 18 1318 12 HOH HOH . R 10 HOH A 19 1319 32 HOH HOH . R 10 HOH A 20 1320 64 HOH HOH . R 10 HOH A 21 1321 31 HOH HOH . R 10 HOH A 22 1322 529 HOH HOH . R 10 HOH A 23 1323 53 HOH HOH . R 10 HOH A 24 1324 13 HOH HOH . R 10 HOH A 25 1325 65 HOH HOH . R 10 HOH A 26 1326 54 HOH HOH . R 10 HOH A 27 1327 52 HOH HOH . R 10 HOH A 28 1328 16 HOH HOH . R 10 HOH A 29 1329 22 HOH HOH . R 10 HOH A 30 1330 20 HOH HOH . R 10 HOH A 31 1331 48 HOH HOH . R 10 HOH A 32 1332 505 HOH HOH . R 10 HOH A 33 1333 51 HOH HOH . R 10 HOH A 34 1334 527 HOH HOH . R 10 HOH A 35 1335 26 HOH HOH . R 10 HOH A 36 1336 503 HOH HOH . R 10 HOH A 37 1337 61 HOH HOH . R 10 HOH A 38 1338 46 HOH HOH . R 10 HOH A 39 1339 56 HOH HOH . R 10 HOH A 40 1340 510 HOH HOH . R 10 HOH A 41 1341 531 HOH HOH . R 10 HOH A 42 1342 514 HOH HOH . R 10 HOH A 43 1343 21 HOH HOH . R 10 HOH A 44 1344 536 HOH HOH . R 10 HOH A 45 1345 55 HOH HOH . R 10 HOH A 46 1346 12 HOH HOH . R 10 HOH A 47 1347 526 HOH HOH . R 10 HOH A 48 1348 504 HOH HOH . R 10 HOH A 49 1349 521 HOH HOH . R 10 HOH A 50 1350 547 HOH HOH . R 10 HOH A 51 1351 36 HOH HOH . R 10 HOH A 52 1352 62 HOH HOH . R 10 HOH A 53 1353 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . D 4 -26.449 41.555 18.81 0.8 51.13 ? C1 BU1 1203 A 1 HETATM 2 C C2 BU1 . . . D 4 -25.248 41.158 19.639 0.8 49.99 ? C2 BU1 1203 A 1 HETATM 3 C C3 BU1 . . . D 4 -25.059 39.66 19.544 0.8 52.58 ? C3 BU1 1203 A 1 HETATM 4 C C4 BU1 . . . D 4 -23.78 39.257 20.243 0.8 58.16 ? C4 BU1 1203 A 1 HETATM 5 O O5 BU1 . . . D 4 -27.053 42.702 19.365 0.8 55.44 ? O5 BU1 1203 A 1 HETATM 6 O O6 BU1 . . . D 4 -23.903 37.936 20.719 0.8 59.15 ? O6 BU1 1203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #