data_5D5A # _model_server_result.job_id SitKQsSxXYiPAOibMqaNEQ _model_server_result.datetime_utc '2024-11-23 19:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 5D5A # _exptl.entry_id 5D5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 5D5A _cell.length_a 107 _cell.length_b 170 _cell.length_c 40.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 401 MAL 2 n B GLC 2 B 2 GLC B 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 F C2 ACM . A ACM 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 J C1 PLM . A PLM 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 249 n n C1 C10 CLR sing 250 n n C1 H11 CLR sing 251 n n C1 H12 CLR sing 252 n n C2 C3 CLR sing 253 n n C2 H21 CLR sing 254 n n C2 H22 CLR sing 255 n n C3 C4 CLR sing 256 n n C3 O1 CLR sing 257 n n C3 H3 CLR sing 258 n n C4 C5 CLR sing 259 n n C4 H41 CLR sing 260 n n C4 H42 CLR sing 261 n n C5 C6 CLR doub 262 n n C5 C10 CLR sing 263 n n C6 C7 CLR sing 264 n n C6 H6 CLR sing 265 n n C7 C8 CLR sing 266 n n C7 H71 CLR sing 267 n n C7 H72 CLR sing 268 n n C8 C9 CLR sing 269 n n C8 C14 CLR sing 270 n n C8 H8 CLR sing 271 n n C9 C10 CLR sing 272 n n C9 C11 CLR sing 273 n n C9 H9 CLR sing 274 n n C10 C19 CLR sing 275 n n C11 C12 CLR sing 276 n n C11 H111 CLR sing 277 n n C11 H112 CLR sing 278 n n C12 C13 CLR sing 279 n n C12 H121 CLR sing 280 n n C12 H122 CLR sing 281 n n C13 C14 CLR sing 282 n n C13 C17 CLR sing 283 n n C13 C18 CLR sing 284 n n C14 C15 CLR sing 285 n n C14 H14 CLR sing 286 n n C15 C16 CLR sing 287 n n C15 H151 CLR sing 288 n n C15 H152 CLR sing 289 n n C16 C17 CLR sing 290 n n C16 H161 CLR sing 291 n n C16 H162 CLR sing 292 n n C17 C20 CLR sing 293 n n C17 H17 CLR sing 294 n n C18 H181 CLR sing 295 n n C18 H182 CLR sing 296 n n C18 H183 CLR sing 297 n n C19 H191 CLR sing 298 n n C19 H192 CLR sing 299 n n C19 H193 CLR sing 300 n n C20 C21 CLR sing 301 n n C20 C22 CLR sing 302 n n C20 H20 CLR sing 303 n n C21 H211 CLR sing 304 n n C21 H212 CLR sing 305 n n C21 H213 CLR sing 306 n n C22 C23 CLR sing 307 n n C22 H221 CLR sing 308 n n C22 H222 CLR sing 309 n n C23 C24 CLR sing 310 n n C23 H231 CLR sing 311 n n C23 H232 CLR sing 312 n n C24 C25 CLR sing 313 n n C24 H241 CLR sing 314 n n C24 H242 CLR sing 315 n n C25 C26 CLR sing 316 n n C25 C27 CLR sing 317 n n C25 H25 CLR sing 318 n n C26 H261 CLR sing 319 n n C26 H262 CLR sing 320 n n C26 H263 CLR sing 321 n n C27 H271 CLR sing 322 n n C27 H272 CLR sing 323 n n C27 H273 CLR sing 324 n n O1 H1 CLR sing 325 n n # _atom_sites.entry_id 5D5A _atom_sites.fract_transf_matrix[1][1] 0.009346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CAU A 1 1202 408 CAU CAU . D 4 BU1 A 1 1203 409 BU1 BU1 . E 4 BU1 A 1 1204 410 BU1 BU1 . F 5 ACM A 1 1205 411 ACM ACM . G 6 CLR A 1 1206 412 CLR CLR . H 6 CLR A 1 1207 413 CLR CLR . I 6 CLR A 1 1208 414 CLR CLR . J 7 PLM A 1 1209 415 PLM PLM . K 8 12P A 1 1210 416 12P 12P . L 9 SO4 A 1 1211 402 SO4 SO4 . M 9 SO4 A 1 1212 403 SO4 SO4 . N 9 SO4 A 1 1213 404 SO4 SO4 . O 9 SO4 A 1 1214 405 SO4 SO4 . P 9 SO4 A 1 1215 406 SO4 SO4 . Q 9 SO4 A 1 1216 407 SO4 SO4 . R 10 HOH A 1 1301 2 HOH HOH . R 10 HOH A 2 1302 1 HOH HOH . R 10 HOH A 3 1303 14 HOH HOH . R 10 HOH A 4 1304 41 HOH HOH . R 10 HOH A 5 1305 44 HOH HOH . R 10 HOH A 6 1306 63 HOH HOH . R 10 HOH A 7 1307 37 HOH HOH . R 10 HOH A 8 1308 58 HOH HOH . R 10 HOH A 9 1309 66 HOH HOH . R 10 HOH A 10 1310 59 HOH HOH . R 10 HOH A 11 1311 57 HOH HOH . R 10 HOH A 12 1312 50 HOH HOH . R 10 HOH A 13 1313 17 HOH HOH . R 10 HOH A 14 1314 508 HOH HOH . R 10 HOH A 15 1315 507 HOH HOH . R 10 HOH A 16 1316 9 HOH HOH . R 10 HOH A 17 1317 33 HOH HOH . R 10 HOH A 18 1318 12 HOH HOH . R 10 HOH A 19 1319 32 HOH HOH . R 10 HOH A 20 1320 64 HOH HOH . R 10 HOH A 21 1321 31 HOH HOH . R 10 HOH A 22 1322 529 HOH HOH . R 10 HOH A 23 1323 53 HOH HOH . R 10 HOH A 24 1324 13 HOH HOH . R 10 HOH A 25 1325 65 HOH HOH . R 10 HOH A 26 1326 54 HOH HOH . R 10 HOH A 27 1327 52 HOH HOH . R 10 HOH A 28 1328 16 HOH HOH . R 10 HOH A 29 1329 22 HOH HOH . R 10 HOH A 30 1330 20 HOH HOH . R 10 HOH A 31 1331 48 HOH HOH . R 10 HOH A 32 1332 505 HOH HOH . R 10 HOH A 33 1333 51 HOH HOH . R 10 HOH A 34 1334 527 HOH HOH . R 10 HOH A 35 1335 26 HOH HOH . R 10 HOH A 36 1336 503 HOH HOH . R 10 HOH A 37 1337 61 HOH HOH . R 10 HOH A 38 1338 46 HOH HOH . R 10 HOH A 39 1339 56 HOH HOH . R 10 HOH A 40 1340 510 HOH HOH . R 10 HOH A 41 1341 531 HOH HOH . R 10 HOH A 42 1342 514 HOH HOH . R 10 HOH A 43 1343 21 HOH HOH . R 10 HOH A 44 1344 536 HOH HOH . R 10 HOH A 45 1345 55 HOH HOH . R 10 HOH A 46 1346 12 HOH HOH . R 10 HOH A 47 1347 526 HOH HOH . R 10 HOH A 48 1348 504 HOH HOH . R 10 HOH A 49 1349 521 HOH HOH . R 10 HOH A 50 1350 547 HOH HOH . R 10 HOH A 51 1351 36 HOH HOH . R 10 HOH A 52 1352 62 HOH HOH . R 10 HOH A 53 1353 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 6 -42.132 28.407 -4.264 0.93 101 ? C1 CLR 1208 A 1 HETATM 2 C C2 CLR . . . I 6 -42.17 29.881 -4.525 0.93 101.53 ? C2 CLR 1208 A 1 HETATM 3 C C3 CLR . . . I 6 -41.128 30.281 -5.369 0.93 100.4 ? C3 CLR 1208 A 1 HETATM 4 C C4 CLR . . . I 6 -41.179 29.497 -6.701 0.93 109.1 ? C4 CLR 1208 A 1 HETATM 5 C C5 CLR . . . I 6 -41.138 27.969 -6.443 0.93 112.06 ? C5 CLR 1208 A 1 HETATM 6 C C6 CLR . . . I 6 -40.808 27.05 -7.467 0.93 114.5 ? C6 CLR 1208 A 1 HETATM 7 C C7 CLR . . . I 6 -40.622 25.472 -6.928 0.93 113.27 ? C7 CLR 1208 A 1 HETATM 8 C C8 CLR . . . I 6 -41.52 25.067 -6.072 0.93 112.04 ? C8 CLR 1208 A 1 HETATM 9 C C9 CLR . . . I 6 -41.814 25.957 -5.091 0.93 106.79 ? C9 CLR 1208 A 1 HETATM 10 C C10 CLR . . . I 6 -42.06 27.523 -5.568 0.93 106.94 ? C10 CLR 1208 A 1 HETATM 11 C C11 CLR . . . I 6 -42.956 25.4 -4.029 0.93 102.72 ? C11 CLR 1208 A 1 HETATM 12 C C12 CLR . . . I 6 -43.282 24.197 -4.066 0.93 105.64 ? C12 CLR 1208 A 1 HETATM 13 C C13 CLR . . . I 6 -42.716 23.412 -5.055 0.93 109.22 ? C13 CLR 1208 A 1 HETATM 14 C C14 CLR . . . I 6 -41.422 24.015 -5.715 0.93 109.32 ? C14 CLR 1208 A 1 HETATM 15 C C15 CLR . . . I 6 -41.013 22.821 -6.791 0.93 107.65 ? C15 CLR 1208 A 1 HETATM 16 C C16 CLR . . . I 6 -41.347 21.381 -5.881 0.93 111.13 ? C16 CLR 1208 A 1 HETATM 17 C C17 CLR . . . I 6 -42.243 21.818 -4.697 0.93 111.22 ? C17 CLR 1208 A 1 HETATM 18 C C18 CLR . . . I 6 -43.786 23.272 -6.145 0.93 106.6 ? C18 CLR 1208 A 1 HETATM 19 C C19 CLR . . . I 6 -43.417 27.584 -6.245 0.93 107.07 ? C19 CLR 1208 A 1 HETATM 20 C C20 CLR . . . I 6 -43.297 20.89 -4.561 0.93 107.53 ? C20 CLR 1208 A 1 HETATM 21 C C21 CLR . . . I 6 -43.927 20.946 -3.159 0.93 103.1 ? C21 CLR 1208 A 1 HETATM 22 C C22 CLR . . . I 6 -42.71 19.425 -4.768 0.93 107.06 ? C22 CLR 1208 A 1 HETATM 23 C C23 CLR . . . I 6 -43.739 18.313 -4.395 0.93 107.58 ? C23 CLR 1208 A 1 HETATM 24 C C24 CLR . . . I 6 -42.998 17.178 -3.621 0.93 101.3 ? C24 CLR 1208 A 1 HETATM 25 C C25 CLR . . . I 6 -42.704 15.959 -4.544 0.93 104.21 ? C25 CLR 1208 A 1 HETATM 26 C C26 CLR . . . I 6 -41.452 16.211 -5.379 0.93 105.94 ? C26 CLR 1208 A 1 HETATM 27 C C27 CLR . . . I 6 -42.461 14.721 -3.674 0.93 95.75 ? C27 CLR 1208 A 1 HETATM 28 O O1 CLR . . . I 6 -41.246 31.709 -5.635 0.93 104.27 ? O1 CLR 1208 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #