data_5D5A # _model_server_result.job_id ZYbs9xLcQ9oHvOKUIk0lgA _model_server_result.datetime_utc '2024-11-23 19:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1209}' # _entry.id 5D5A # _exptl.entry_id 5D5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 5D5A _cell.length_a 107 _cell.length_b 170 _cell.length_c 40.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 401 MAL 2 n B GLC 2 B 2 GLC B 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 F C2 ACM . A ACM 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 J C1 PLM . A PLM 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 540 n n C1 O2 PLM doub 541 n n C1 C2 PLM sing 542 n n O1 H PLM sing 543 n n C2 C3 PLM sing 544 n n C2 H21 PLM sing 545 n n C2 H22 PLM sing 546 n n C3 C4 PLM sing 547 n n C3 H31 PLM sing 548 n n C3 H32 PLM sing 549 n n C4 C5 PLM sing 550 n n C4 H41 PLM sing 551 n n C4 H42 PLM sing 552 n n C5 C6 PLM sing 553 n n C5 H51 PLM sing 554 n n C5 H52 PLM sing 555 n n C6 C7 PLM sing 556 n n C6 H61 PLM sing 557 n n C6 H62 PLM sing 558 n n C7 C8 PLM sing 559 n n C7 H71 PLM sing 560 n n C7 H72 PLM sing 561 n n C8 C9 PLM sing 562 n n C8 H81 PLM sing 563 n n C8 H82 PLM sing 564 n n C9 CA PLM sing 565 n n C9 H91 PLM sing 566 n n C9 H92 PLM sing 567 n n CA CB PLM sing 568 n n CA HA1 PLM sing 569 n n CA HA2 PLM sing 570 n n CB CC PLM sing 571 n n CB HB1 PLM sing 572 n n CB HB2 PLM sing 573 n n CC CD PLM sing 574 n n CC HC1 PLM sing 575 n n CC HC2 PLM sing 576 n n CD CE PLM sing 577 n n CD HD1 PLM sing 578 n n CD HD2 PLM sing 579 n n CE CF PLM sing 580 n n CE HE1 PLM sing 581 n n CE HE2 PLM sing 582 n n CF CG PLM sing 583 n n CF HF1 PLM sing 584 n n CF HF2 PLM sing 585 n n CG HG1 PLM sing 586 n n CG HG2 PLM sing 587 n n CG HG3 PLM sing 588 n n # _atom_sites.entry_id 5D5A _atom_sites.fract_transf_matrix[1][1] 0.009346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CAU A 1 1202 408 CAU CAU . D 4 BU1 A 1 1203 409 BU1 BU1 . E 4 BU1 A 1 1204 410 BU1 BU1 . F 5 ACM A 1 1205 411 ACM ACM . G 6 CLR A 1 1206 412 CLR CLR . H 6 CLR A 1 1207 413 CLR CLR . I 6 CLR A 1 1208 414 CLR CLR . J 7 PLM A 1 1209 415 PLM PLM . K 8 12P A 1 1210 416 12P 12P . L 9 SO4 A 1 1211 402 SO4 SO4 . M 9 SO4 A 1 1212 403 SO4 SO4 . N 9 SO4 A 1 1213 404 SO4 SO4 . O 9 SO4 A 1 1214 405 SO4 SO4 . P 9 SO4 A 1 1215 406 SO4 SO4 . Q 9 SO4 A 1 1216 407 SO4 SO4 . R 10 HOH A 1 1301 2 HOH HOH . R 10 HOH A 2 1302 1 HOH HOH . R 10 HOH A 3 1303 14 HOH HOH . R 10 HOH A 4 1304 41 HOH HOH . R 10 HOH A 5 1305 44 HOH HOH . R 10 HOH A 6 1306 63 HOH HOH . R 10 HOH A 7 1307 37 HOH HOH . R 10 HOH A 8 1308 58 HOH HOH . R 10 HOH A 9 1309 66 HOH HOH . R 10 HOH A 10 1310 59 HOH HOH . R 10 HOH A 11 1311 57 HOH HOH . R 10 HOH A 12 1312 50 HOH HOH . R 10 HOH A 13 1313 17 HOH HOH . R 10 HOH A 14 1314 508 HOH HOH . R 10 HOH A 15 1315 507 HOH HOH . R 10 HOH A 16 1316 9 HOH HOH . R 10 HOH A 17 1317 33 HOH HOH . R 10 HOH A 18 1318 12 HOH HOH . R 10 HOH A 19 1319 32 HOH HOH . R 10 HOH A 20 1320 64 HOH HOH . R 10 HOH A 21 1321 31 HOH HOH . R 10 HOH A 22 1322 529 HOH HOH . R 10 HOH A 23 1323 53 HOH HOH . R 10 HOH A 24 1324 13 HOH HOH . R 10 HOH A 25 1325 65 HOH HOH . R 10 HOH A 26 1326 54 HOH HOH . R 10 HOH A 27 1327 52 HOH HOH . R 10 HOH A 28 1328 16 HOH HOH . R 10 HOH A 29 1329 22 HOH HOH . R 10 HOH A 30 1330 20 HOH HOH . R 10 HOH A 31 1331 48 HOH HOH . R 10 HOH A 32 1332 505 HOH HOH . R 10 HOH A 33 1333 51 HOH HOH . R 10 HOH A 34 1334 527 HOH HOH . R 10 HOH A 35 1335 26 HOH HOH . R 10 HOH A 36 1336 503 HOH HOH . R 10 HOH A 37 1337 61 HOH HOH . R 10 HOH A 38 1338 46 HOH HOH . R 10 HOH A 39 1339 56 HOH HOH . R 10 HOH A 40 1340 510 HOH HOH . R 10 HOH A 41 1341 531 HOH HOH . R 10 HOH A 42 1342 514 HOH HOH . R 10 HOH A 43 1343 21 HOH HOH . R 10 HOH A 44 1344 536 HOH HOH . R 10 HOH A 45 1345 55 HOH HOH . R 10 HOH A 46 1346 12 HOH HOH . R 10 HOH A 47 1347 526 HOH HOH . R 10 HOH A 48 1348 504 HOH HOH . R 10 HOH A 49 1349 521 HOH HOH . R 10 HOH A 50 1350 547 HOH HOH . R 10 HOH A 51 1351 36 HOH HOH . R 10 HOH A 52 1352 62 HOH HOH . R 10 HOH A 53 1353 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . J 7 -58.765 32.662 5.107 0.84 101.13 ? C1 PLM 1209 A 1 HETATM 2 O O2 PLM . . . J 7 -57.835 32.692 4.318 0.84 100.69 ? O2 PLM 1209 A 1 HETATM 3 C C2 PLM . . . J 7 -58.453 31.187 5.044 0.84 93.41 ? C2 PLM 1209 A 1 HETATM 4 C C3 PLM . . . J 7 -59.707 30.428 4.636 0.84 81.05 ? C3 PLM 1209 A 1 HETATM 5 C C4 PLM . . . J 7 -59.401 29.527 3.45 0.84 86.81 ? C4 PLM 1209 A 1 HETATM 6 C C5 PLM . . . J 7 -60.352 28.342 3.431 0.84 86.81 ? C5 PLM 1209 A 1 HETATM 7 C C6 PLM . . . J 7 -59.95 27.367 2.336 0.84 81.61 ? C6 PLM 1209 A 1 HETATM 8 C C7 PLM . . . J 7 -60.616 26.016 2.551 0.84 85.28 ? C7 PLM 1209 A 1 HETATM 9 C C8 PLM . . . J 7 -59.602 24.911 2.297 0.84 84.53 ? C8 PLM 1209 A 1 HETATM 10 C C9 PLM . . . J 7 -60.171 23.538 2.621 0.84 79.43 ? C9 PLM 1209 A 1 HETATM 11 C CA PLM . . . J 7 -59.029 22.535 2.704 0.84 78.64 ? CA PLM 1209 A 1 HETATM 12 C CB PLM . . . J 7 -59.441 21.193 2.12 0.84 88.93 ? CB PLM 1209 A 1 HETATM 13 C CC PLM . . . J 7 -58.235 20.48 1.522 0.84 91.43 ? CC PLM 1209 A 1 HETATM 14 C CD PLM . . . J 7 -57.916 19.204 2.29 0.84 90.14 ? CD PLM 1209 A 1 HETATM 15 C CE PLM . . . J 7 -57.005 18.299 1.469 0.84 95.19 ? CE PLM 1209 A 1 HETATM 16 C CF PLM . . . J 7 -56.977 16.888 2.043 0.84 96.39 ? CF PLM 1209 A 1 HETATM 17 C CG PLM . . . J 7 -56.222 15.947 1.13 0.84 104.66 ? CG PLM 1209 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #