data_5D5B # _model_server_result.job_id GV9yJiCvyClH2Yr6aPwx-Q _model_server_result.datetime_utc '2024-11-08 12:53:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 5D5B # _exptl.entry_id 5D5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 5D5B _cell.length_a 107 _cell.length_b 170 _cell.length_c 40.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 401 MAL 2 n B GLC 2 B 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 E C2 ACM . A ACM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 I C1 PLM . A PLM 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.681 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 163 n n C1 C10 CLR sing 164 n n C1 H11 CLR sing 165 n n C1 H12 CLR sing 166 n n C2 C3 CLR sing 167 n n C2 H21 CLR sing 168 n n C2 H22 CLR sing 169 n n C3 C4 CLR sing 170 n n C3 O1 CLR sing 171 n n C3 H3 CLR sing 172 n n C4 C5 CLR sing 173 n n C4 H41 CLR sing 174 n n C4 H42 CLR sing 175 n n C5 C6 CLR doub 176 n n C5 C10 CLR sing 177 n n C6 C7 CLR sing 178 n n C6 H6 CLR sing 179 n n C7 C8 CLR sing 180 n n C7 H71 CLR sing 181 n n C7 H72 CLR sing 182 n n C8 C9 CLR sing 183 n n C8 C14 CLR sing 184 n n C8 H8 CLR sing 185 n n C9 C10 CLR sing 186 n n C9 C11 CLR sing 187 n n C9 H9 CLR sing 188 n n C10 C19 CLR sing 189 n n C11 C12 CLR sing 190 n n C11 H111 CLR sing 191 n n C11 H112 CLR sing 192 n n C12 C13 CLR sing 193 n n C12 H121 CLR sing 194 n n C12 H122 CLR sing 195 n n C13 C14 CLR sing 196 n n C13 C17 CLR sing 197 n n C13 C18 CLR sing 198 n n C14 C15 CLR sing 199 n n C14 H14 CLR sing 200 n n C15 C16 CLR sing 201 n n C15 H151 CLR sing 202 n n C15 H152 CLR sing 203 n n C16 C17 CLR sing 204 n n C16 H161 CLR sing 205 n n C16 H162 CLR sing 206 n n C17 C20 CLR sing 207 n n C17 H17 CLR sing 208 n n C18 H181 CLR sing 209 n n C18 H182 CLR sing 210 n n C18 H183 CLR sing 211 n n C19 H191 CLR sing 212 n n C19 H192 CLR sing 213 n n C19 H193 CLR sing 214 n n C20 C21 CLR sing 215 n n C20 C22 CLR sing 216 n n C20 H20 CLR sing 217 n n C21 H211 CLR sing 218 n n C21 H212 CLR sing 219 n n C21 H213 CLR sing 220 n n C22 C23 CLR sing 221 n n C22 H221 CLR sing 222 n n C22 H222 CLR sing 223 n n C23 C24 CLR sing 224 n n C23 H231 CLR sing 225 n n C23 H232 CLR sing 226 n n C24 C25 CLR sing 227 n n C24 H241 CLR sing 228 n n C24 H242 CLR sing 229 n n C25 C26 CLR sing 230 n n C25 C27 CLR sing 231 n n C25 H25 CLR sing 232 n n C26 H261 CLR sing 233 n n C26 H262 CLR sing 234 n n C26 H263 CLR sing 235 n n C27 H271 CLR sing 236 n n C27 H272 CLR sing 237 n n C27 H273 CLR sing 238 n n O1 H1 CLR sing 239 n n # _atom_sites.entry_id 5D5B _atom_sites.fract_transf_matrix[1][1] 0.009346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CAU A 1 1202 408 CAU CAU . D 4 BU1 A 1 1203 410 BU1 BU1 . E 5 ACM A 1 1204 411 ACM ACM . F 6 CLR A 1 1205 412 CLR CLR . G 6 CLR A 1 1206 413 CLR CLR . H 6 CLR A 1 1207 414 CLR CLR . I 7 PLM A 1 1208 415 PLM PLM . J 8 SO4 A 1 1209 402 SO4 SO4 . K 8 SO4 A 1 1210 403 SO4 SO4 . L 8 SO4 A 1 1211 404 SO4 SO4 . M 8 SO4 A 1 1212 405 SO4 SO4 . N 8 SO4 A 1 1213 406 SO4 SO4 . O 8 SO4 A 1 1214 407 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 6 -52.435 29.561 2.507 0.86 91.7 ? C1 CLR 1206 A 1 HETATM 2 C C2 CLR . . . G 6 -52.535 31.054 2.417 0.86 92.29 ? C2 CLR 1206 A 1 HETATM 3 C C3 CLR . . . G 6 -53.59 31.458 1.588 0.86 91.48 ? C3 CLR 1206 A 1 HETATM 4 C C4 CLR . . . G 6 -54.927 30.904 2.125 0.86 91.02 ? C4 CLR 1206 A 1 HETATM 5 C C5 CLR . . . G 6 -54.853 29.363 2.199 0.86 91.34 ? C5 CLR 1206 A 1 HETATM 6 C C6 CLR . . . G 6 -55.863 28.508 1.699 0.86 91.34 ? C6 CLR 1206 A 1 HETATM 7 C C7 CLR . . . G 6 -55.239 27.042 1.192 0.86 90.29 ? C7 CLR 1206 A 1 HETATM 8 C C8 CLR . . . G 6 -54.516 26.456 2.099 0.86 89.73 ? C8 CLR 1206 A 1 HETATM 9 C C9 CLR . . . G 6 -53.523 27.216 2.627 0.86 90.2 ? C9 CLR 1206 A 1 HETATM 10 C C10 CLR . . . G 6 -53.795 28.838 2.859 0.86 91.41 ? C10 CLR 1206 A 1 HETATM 11 C C11 CLR . . . G 6 -52.8 26.462 3.914 0.86 88.96 ? C11 CLR 1206 A 1 HETATM 12 C C12 CLR . . . G 6 -52.816 25.215 3.946 0.86 88.42 ? C12 CLR 1206 A 1 HETATM 13 C C13 CLR . . . G 6 -53.752 24.577 3.147 0.86 89.18 ? C13 CLR 1206 A 1 HETATM 14 C C14 CLR . . . G 6 -54.194 25.409 1.884 0.86 89.23 ? C14 CLR 1206 A 1 HETATM 15 C C15 CLR . . . G 6 -55.238 24.367 1.122 0.86 88.59 ? C15 CLR 1206 A 1 HETATM 16 C C16 CLR . . . G 6 -54.475 22.83 1.392 0.86 88.57 ? C16 CLR 1206 A 1 HETATM 17 C C17 CLR . . . G 6 -53.391 23.058 2.471 0.86 88.77 ? C17 CLR 1206 A 1 HETATM 18 C C18 CLR . . . G 6 -54.989 24.356 4.027 0.86 90.34 ? C18 CLR 1206 A 1 HETATM 19 C C19 CLR . . . G 6 -54.04 29.049 4.338 0.86 90.68 ? C19 CLR 1206 A 1 HETATM 20 C C20 CLR . . . G 6 -53.41 21.929 3.317 0.86 89.26 ? C20 CLR 1206 A 1 HETATM 21 C C21 CLR . . . G 6 -52.319 21.928 4.403 0.86 87.95 ? C21 CLR 1206 A 1 HETATM 22 C C22 CLR . . . G 6 -53.14 20.67 2.385 0.86 90.55 ? C22 CLR 1206 A 1 HETATM 23 C C23 CLR . . . G 6 -53.117 19.335 3.186 0.86 90.6 ? C23 CLR 1206 A 1 HETATM 24 C C24 CLR . . . G 6 -52.573 18.226 2.237 0.86 92.24 ? C24 CLR 1206 A 1 HETATM 25 C C25 CLR . . . G 6 -52.113 16.994 3.061 0.86 92.75 ? C25 CLR 1206 A 1 HETATM 26 C C26 CLR . . . G 6 -51.75 15.874 2.092 0.86 90.99 ? C26 CLR 1206 A 1 HETATM 27 C C27 CLR . . . G 6 -50.891 17.364 3.912 0.86 89.03 ? C27 CLR 1206 A 1 HETATM 28 O O1 CLR . . . G 6 -53.663 32.913 1.534 0.86 91.01 ? O1 CLR 1206 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #