data_5D5C
#
_model_server_result.job_id            LH3on0JweAO-KVxqT_hWVQ 
_model_server_result.datetime_utc      '2024-11-08 12:42:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    5D5C 
#
_exptl.entry_id    5D5C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D5C 
_cell.length_a            79.09 
_cell.length_b            79.09 
_cell.length_c            38.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D5C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc5 I NA NA . A NA 208 1_555 L O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc6 I NA NA . A NA 208 1_555 L O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 244 n n 
C48 H481 PE5 sing 245 n n 
C48 H482 PE5 sing 246 n n 
C48 H483 PE5 sing 247 n n 
C50 O1 PE5 sing 248 n n 
C50 H501 PE5 sing 249 n n 
C50 H502 PE5 sing 250 n n 
O1 C1 PE5 sing 251 n n 
C1 C2 PE5 sing 252 n n 
C1 H11 PE5 sing 253 n n 
C1 H12 PE5 sing 254 n n 
C2 O2 PE5 sing 255 n n 
C2 H21 PE5 sing 256 n n 
C2 H22 PE5 sing 257 n n 
O2 C3 PE5 sing 258 n n 
C3 C4 PE5 sing 259 n n 
C3 H31 PE5 sing 260 n n 
C3 H32 PE5 sing 261 n n 
C4 O3 PE5 sing 262 n n 
C4 H41 PE5 sing 263 n n 
C4 H42 PE5 sing 264 n n 
O3 C5 PE5 sing 265 n n 
C5 C6 PE5 sing 266 n n 
C5 H51 PE5 sing 267 n n 
C5 H52A PE5 sing 268 n n 
C6 O4 PE5 sing 269 n n 
C6 H61 PE5 sing 270 n n 
C6 H62 PE5 sing 271 n n 
O4 C7 PE5 sing 272 n n 
C7 C8 PE5 sing 273 n n 
C7 H71 PE5 sing 274 n n 
C7 H72 PE5 sing 275 n n 
C8 O5 PE5 sing 276 n n 
C8 H81 PE5 sing 277 n n 
C8 H82 PE5 sing 278 n n 
O5 C9 PE5 sing 279 n n 
C9 C10 PE5 sing 280 n n 
C9 H91 PE5 sing 281 n n 
C9 H92 PE5 sing 282 n n 
C10 O6 PE5 sing 283 n n 
C10 H101 PE5 sing 284 n n 
C10 H102 PE5 sing 285 n n 
O6 C11 PE5 sing 286 n n 
C11 C12 PE5 sing 287 n n 
C11 H111 PE5 sing 288 n n 
C11 H112 PE5 sing 289 n n 
C12 O7 PE5 sing 290 n n 
C12 H121 PE5 sing 291 n n 
C12 H122 PE5 sing 292 n n 
O7 C13 PE5 sing 293 n n 
C13 C14 PE5 sing 294 n n 
C13 H131 PE5 sing 295 n n 
C13 H132 PE5 sing 296 n n 
C14 O8 PE5 sing 297 n n 
C14 H141 PE5 sing 298 n n 
C14 H142 PE5 sing 299 n n 
O8 C15 PE5 sing 300 n n 
C15 C16 PE5 sing 301 n n 
C15 H151 PE5 sing 302 n n 
C15 H152 PE5 sing 303 n n 
C16 O52 PE5 sing 304 n n 
C16 H161 PE5 sing 305 n n 
C16 H162 PE5 sing 306 n n 
O52 H52 PE5 sing 307 n n 
#
_atom_sites.entry_id                     5D5C 
_atom_sites.fract_transf_matrix[1][1]    0.012644 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BR A 1 201 1 BR BR . 
C 2 BR A 1 202 2 BR BR . 
D 2 BR A 1 203 3 BR BR . 
E 2 BR A 1 204 4 BR BR . 
F 2 BR A 1 205 5 BR BR . 
G 2 BR A 1 206 6 BR BR . 
H 2 BR A 1 207 7 BR BR . 
I 3 NA A 1 208 8 NA NA . 
J 4 ACY A 1 209 9 ACY ACY . 
K 5 PE5 A 1 210 11 PE5 PE5 . 
L 6 HOH A 1 301 116 HOH HOH . 
L 6 HOH A 2 302 63 HOH HOH . 
L 6 HOH A 3 303 71 HOH HOH . 
L 6 HOH A 4 304 101 HOH HOH . 
L 6 HOH A 5 305 127 HOH HOH . 
L 6 HOH A 6 306 128 HOH HOH . 
L 6 HOH A 7 307 91 HOH HOH . 
L 6 HOH A 8 308 12 HOH HOH . 
L 6 HOH A 9 309 42 HOH HOH . 
L 6 HOH A 10 310 30 HOH HOH . 
L 6 HOH A 11 311 39 HOH HOH . 
L 6 HOH A 12 312 102 HOH HOH . 
L 6 HOH A 13 313 103 HOH HOH . 
L 6 HOH A 14 314 59 HOH HOH . 
L 6 HOH A 15 315 53 HOH HOH . 
L 6 HOH A 16 316 31 HOH HOH . 
L 6 HOH A 17 317 84 HOH HOH . 
L 6 HOH A 18 318 29 HOH HOH . 
L 6 HOH A 19 319 46 HOH HOH . 
L 6 HOH A 20 320 19 HOH HOH . 
L 6 HOH A 21 321 60 HOH HOH . 
L 6 HOH A 22 322 78 HOH HOH . 
L 6 HOH A 23 323 18 HOH HOH . 
L 6 HOH A 24 324 37 HOH HOH . 
L 6 HOH A 25 325 20 HOH HOH . 
L 6 HOH A 26 326 95 HOH HOH . 
L 6 HOH A 27 327 61 HOH HOH . 
L 6 HOH A 28 328 6 HOH HOH . 
L 6 HOH A 29 329 14 HOH HOH . 
L 6 HOH A 30 330 122 HOH HOH . 
L 6 HOH A 31 331 21 HOH HOH . 
L 6 HOH A 32 332 23 HOH HOH . 
L 6 HOH A 33 333 22 HOH HOH . 
L 6 HOH A 34 334 47 HOH HOH . 
L 6 HOH A 35 335 85 HOH HOH . 
L 6 HOH A 36 336 43 HOH HOH . 
L 6 HOH A 37 337 1 HOH HOH . 
L 6 HOH A 38 338 115 HOH HOH . 
L 6 HOH A 39 339 38 HOH HOH . 
L 6 HOH A 40 340 130 HOH HOH . 
L 6 HOH A 41 341 16 HOH HOH . 
L 6 HOH A 42 342 51 HOH HOH . 
L 6 HOH A 43 343 48 HOH HOH . 
L 6 HOH A 44 344 11 HOH HOH . 
L 6 HOH A 45 345 54 HOH HOH . 
L 6 HOH A 46 346 44 HOH HOH . 
L 6 HOH A 47 347 27 HOH HOH . 
L 6 HOH A 48 348 10 HOH HOH . 
L 6 HOH A 49 349 93 HOH HOH . 
L 6 HOH A 50 350 52 HOH HOH . 
L 6 HOH A 51 351 77 HOH HOH . 
L 6 HOH A 52 352 24 HOH HOH . 
L 6 HOH A 53 353 94 HOH HOH . 
L 6 HOH A 54 354 34 HOH HOH . 
L 6 HOH A 55 355 3 HOH HOH . 
L 6 HOH A 56 356 76 HOH HOH . 
L 6 HOH A 57 357 15 HOH HOH . 
L 6 HOH A 58 358 9 HOH HOH . 
L 6 HOH A 59 359 99 HOH HOH . 
L 6 HOH A 60 360 28 HOH HOH . 
L 6 HOH A 61 361 13 HOH HOH . 
L 6 HOH A 62 362 35 HOH HOH . 
L 6 HOH A 63 363 119 HOH HOH . 
L 6 HOH A 64 364 126 HOH HOH . 
L 6 HOH A 65 365 74 HOH HOH . 
L 6 HOH A 66 366 17 HOH HOH . 
L 6 HOH A 67 367 117 HOH HOH . 
L 6 HOH A 68 368 66 HOH HOH . 
L 6 HOH A 69 369 131 HOH HOH . 
L 6 HOH A 70 370 4 HOH HOH . 
L 6 HOH A 71 371 70 HOH HOH . 
L 6 HOH A 72 372 79 HOH HOH . 
L 6 HOH A 73 373 106 HOH HOH . 
L 6 HOH A 74 374 25 HOH HOH . 
L 6 HOH A 75 375 75 HOH HOH . 
L 6 HOH A 76 376 7 HOH HOH . 
L 6 HOH A 77 377 33 HOH HOH . 
L 6 HOH A 78 378 26 HOH HOH . 
L 6 HOH A 79 379 5 HOH HOH . 
L 6 HOH A 80 380 58 HOH HOH . 
L 6 HOH A 81 381 97 HOH HOH . 
L 6 HOH A 82 382 62 HOH HOH . 
L 6 HOH A 83 383 124 HOH HOH . 
L 6 HOH A 84 384 96 HOH HOH . 
L 6 HOH A 85 385 111 HOH HOH . 
L 6 HOH A 86 386 56 HOH HOH . 
L 6 HOH A 87 387 88 HOH HOH . 
L 6 HOH A 88 388 121 HOH HOH . 
L 6 HOH A 89 389 86 HOH HOH . 
L 6 HOH A 90 390 45 HOH HOH . 
L 6 HOH A 91 391 57 HOH HOH . 
L 6 HOH A 92 392 36 HOH HOH . 
L 6 HOH A 93 393 82 HOH HOH . 
L 6 HOH A 94 394 83 HOH HOH . 
L 6 HOH A 95 395 87 HOH HOH . 
L 6 HOH A 96 396 55 HOH HOH . 
L 6 HOH A 97 397 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 PE5 . . . K 5 79.71 47.809 23.747 1 46.35 ? O3 PE5 210 A 1 
HETATM 2 C C5 PE5 . . . K 5 80.967 47.211 23.667 1 39.83 ? C5 PE5 210 A 1 
HETATM 3 C C6 PE5 . . . K 5 81.999 48.062 24.47 1 34.89 ? C6 PE5 210 A 1 
HETATM 4 O O4 PE5 . . . K 5 82.014 49.38 23.934 1 42.11 ? O4 PE5 210 A 1 
HETATM 5 C C7 PE5 . . . K 5 83.225 50.088 24.194 1 29.81 ? C7 PE5 210 A 1 
HETATM 6 C C8 PE5 . . . K 5 83.826 50.551 22.82 1 32.12 ? C8 PE5 210 A 1 
HETATM 7 O O5 PE5 . . . K 5 83.202 51.72 22.428 1 36.48 ? O5 PE5 210 A 1 
HETATM 8 C C9 PE5 . . . K 5 83.037 51.831 21.003 1 36.2 ? C9 PE5 210 A 1 
HETATM 9 C C10 PE5 . . . K 5 81.522 52.007 20.669 1 45.22 ? C10 PE5 210 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#