data_5D5D # _model_server_result.job_id zWa_unF_tUZyB1y5oqvsHA _model_server_result.datetime_utc '2024-11-08 12:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 5D5D # _exptl.entry_id 5D5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D5D _cell.length_a 46.33 _cell.length_b 66.35 _cell.length_c 176.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc11 A OE1 GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc12 A O ASN 265 A ASN 265 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc13 A OD1 ASN 273 A ASN 273 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc14 A OG SER 304 A SER 304 1_555 D CA CA . A CA 503 3_1155 ? ? ? ? ? ? ? ? ? ? ? ? 32.126 ? metalc ? metalc15 A OD1 ASN 319 A ASN 319 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc16 A OE1 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc17 A OE2 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 215 n n N1 CM1 LDA sing 216 n n N1 CM2 LDA sing 217 n n N1 C1 LDA sing 218 n n CM1 HM11 LDA sing 219 n n CM1 HM12 LDA sing 220 n n CM1 HM13 LDA sing 221 n n CM2 HM21 LDA sing 222 n n CM2 HM22 LDA sing 223 n n CM2 HM23 LDA sing 224 n n C1 C2 LDA sing 225 n n C1 H11 LDA sing 226 n n C1 H12 LDA sing 227 n n C2 C3 LDA sing 228 n n C2 H21 LDA sing 229 n n C2 H22 LDA sing 230 n n C3 C4 LDA sing 231 n n C3 H31 LDA sing 232 n n C3 H32 LDA sing 233 n n C4 C5 LDA sing 234 n n C4 H41 LDA sing 235 n n C4 H42 LDA sing 236 n n C5 C6 LDA sing 237 n n C5 H51 LDA sing 238 n n C5 H52 LDA sing 239 n n C6 C7 LDA sing 240 n n C6 H61 LDA sing 241 n n C6 H62 LDA sing 242 n n C7 C8 LDA sing 243 n n C7 H71 LDA sing 244 n n C7 H72 LDA sing 245 n n C8 C9 LDA sing 246 n n C8 H81 LDA sing 247 n n C8 H82 LDA sing 248 n n C9 C10 LDA sing 249 n n C9 H91 LDA sing 250 n n C9 H92 LDA sing 251 n n C10 C11 LDA sing 252 n n C10 H101 LDA sing 253 n n C10 H102 LDA sing 254 n n C11 C12 LDA sing 255 n n C11 H111 LDA sing 256 n n C11 H112 LDA sing 257 n n C12 H121 LDA sing 258 n n C12 H122 LDA sing 259 n n C12 H123 LDA sing 260 n n # _atom_sites.entry_id 5D5D _atom_sites.fract_transf_matrix[1][1] 0.021584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 4 NA NA . C 2 NA A 1 502 5 NA NA . D 3 CA A 1 503 1 CA CA . E 4 LDA A 1 504 3 LDA LDA . F 4 LDA A 1 505 5 LDA LDA . G 4 LDA A 1 506 6 LDA LDA . H 4 LDA A 1 507 7 LDA LDA . I 4 LDA A 1 508 8 LDA LDA . J 4 LDA A 1 509 9 LDA LDA . K 4 LDA A 1 510 10 LDA LDA . L 5 PE5 A 1 511 1 PE5 PE5 . M 5 PE5 A 1 512 3 PE5 PE5 . N 5 PE5 A 1 513 4 PE5 PE5 . O 5 PE5 A 1 514 5 PE5 PE5 . P 5 PE5 A 1 515 6 PE5 PE5 . Q 6 78M A 1 516 1 78M 78M . R 6 78M A 1 517 2 78M 78M . S 7 MES A 1 518 2 MES MES . T 7 MES A 1 519 3 MES MES . U 8 HOH A 1 601 10 HOH HOH . U 8 HOH A 2 602 11 HOH HOH . U 8 HOH A 3 603 1 HOH HOH . U 8 HOH A 4 604 6 HOH HOH . U 8 HOH A 5 605 81 HOH HOH . U 8 HOH A 6 606 15 HOH HOH . U 8 HOH A 7 607 5 HOH HOH . U 8 HOH A 8 608 87 HOH HOH . U 8 HOH A 9 609 70 HOH HOH . U 8 HOH A 10 610 64 HOH HOH . U 8 HOH A 11 611 27 HOH HOH . U 8 HOH A 12 612 40 HOH HOH . U 8 HOH A 13 613 12 HOH HOH . U 8 HOH A 14 614 71 HOH HOH . U 8 HOH A 15 615 69 HOH HOH . U 8 HOH A 16 616 13 HOH HOH . U 8 HOH A 17 617 43 HOH HOH . U 8 HOH A 18 618 50 HOH HOH . U 8 HOH A 19 619 86 HOH HOH . U 8 HOH A 20 620 16 HOH HOH . U 8 HOH A 21 621 82 HOH HOH . U 8 HOH A 22 622 55 HOH HOH . U 8 HOH A 23 623 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . G 4 158.974 162.1 26.402 1 83.64 ? N1 LDA 506 A 1 HETATM 2 O O1 LDA . . . G 4 157.911 161.527 26.551 1 84.32 ? O1 LDA 506 A 1 HETATM 3 C CM1 LDA . . . G 4 159.682 162.112 27.64 1 84.59 ? CM1 LDA 506 A 1 HETATM 4 C CM2 LDA . . . G 4 158.783 163.485 26.043 1 82.24 ? CM2 LDA 506 A 1 HETATM 5 C C1 LDA . . . G 4 159.854 161.436 25.462 1 82.03 ? C1 LDA 506 A 1 HETATM 6 C C2 LDA . . . G 4 159.265 161.056 24.08 1 81.02 ? C2 LDA 506 A 1 HETATM 7 C C3 LDA . . . G 4 160.031 161.745 22.924 1 80.01 ? C3 LDA 506 A 1 HETATM 8 C C4 LDA . . . G 4 159.384 161.515 21.555 1 78.67 ? C4 LDA 506 A 1 HETATM 9 C C5 LDA . . . G 4 158.851 162.841 20.902 1 75.46 ? C5 LDA 506 A 1 HETATM 10 C C6 LDA . . . G 4 157.398 162.712 20.401 1 72.67 ? C6 LDA 506 A 1 HETATM 11 C C7 LDA . . . G 4 157.314 162.273 18.891 1 70.05 ? C7 LDA 506 A 1 HETATM 12 C C8 LDA . . . G 4 155.899 162.094 18.396 1 66.17 ? C8 LDA 506 A 1 HETATM 13 C C9 LDA . . . G 4 155.54 163.132 17.337 1 62.43 ? C9 LDA 506 A 1 HETATM 14 C C10 LDA . . . G 4 154.938 162.538 16.079 1 60.61 ? C10 LDA 506 A 1 HETATM 15 C C11 LDA . . . G 4 154.215 163.66 15.229 1 61.39 ? C11 LDA 506 A 1 HETATM 16 C C12 LDA . . . G 4 155.093 164.178 14.044 1 61.91 ? C12 LDA 506 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #