data_5D5D
#
_model_server_result.job_id            LwsN6qz3CqqqA4NfmvwyvQ 
_model_server_result.datetime_utc      '2024-11-08 12:58:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":513}' 
#
_entry.id    5D5D 
#
_exptl.entry_id    5D5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D5D 
_cell.length_a            46.33 
_cell.length_b            66.35 
_cell.length_c            176.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc7 A O ALA 136 A ALA 136 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc8 A O THR 139 A THR 139 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc9 A O TYR 141 A TYR 141 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc10 A O GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc11 A OE1 GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc12 A O ASN 265 A ASN 265 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc13 A OD1 ASN 273 A ASN 273 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc14 A OG SER 304 A SER 304 1_555 D CA CA . A CA 503 3_1155 ? ? ? ? ? ? ? ? ? ? ? ? 32.126 ? 
metalc ? metalc15 A OD1 ASN 319 A ASN 319 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? 
metalc ? metalc16 A OE1 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc17 A OE2 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 350 n n 
C48 H481 PE5 sing 351 n n 
C48 H482 PE5 sing 352 n n 
C48 H483 PE5 sing 353 n n 
C50 O1 PE5 sing 354 n n 
C50 H501 PE5 sing 355 n n 
C50 H502 PE5 sing 356 n n 
O1 C1 PE5 sing 357 n n 
C1 C2 PE5 sing 358 n n 
C1 H11 PE5 sing 359 n n 
C1 H12 PE5 sing 360 n n 
C2 O2 PE5 sing 361 n n 
C2 H21 PE5 sing 362 n n 
C2 H22 PE5 sing 363 n n 
O2 C3 PE5 sing 364 n n 
C3 C4 PE5 sing 365 n n 
C3 H31 PE5 sing 366 n n 
C3 H32 PE5 sing 367 n n 
C4 O3 PE5 sing 368 n n 
C4 H41 PE5 sing 369 n n 
C4 H42 PE5 sing 370 n n 
O3 C5 PE5 sing 371 n n 
C5 C6 PE5 sing 372 n n 
C5 H51 PE5 sing 373 n n 
C5 H52A PE5 sing 374 n n 
C6 O4 PE5 sing 375 n n 
C6 H61 PE5 sing 376 n n 
C6 H62 PE5 sing 377 n n 
O4 C7 PE5 sing 378 n n 
C7 C8 PE5 sing 379 n n 
C7 H71 PE5 sing 380 n n 
C7 H72 PE5 sing 381 n n 
C8 O5 PE5 sing 382 n n 
C8 H81 PE5 sing 383 n n 
C8 H82 PE5 sing 384 n n 
O5 C9 PE5 sing 385 n n 
C9 C10 PE5 sing 386 n n 
C9 H91 PE5 sing 387 n n 
C9 H92 PE5 sing 388 n n 
C10 O6 PE5 sing 389 n n 
C10 H101 PE5 sing 390 n n 
C10 H102 PE5 sing 391 n n 
O6 C11 PE5 sing 392 n n 
C11 C12 PE5 sing 393 n n 
C11 H111 PE5 sing 394 n n 
C11 H112 PE5 sing 395 n n 
C12 O7 PE5 sing 396 n n 
C12 H121 PE5 sing 397 n n 
C12 H122 PE5 sing 398 n n 
O7 C13 PE5 sing 399 n n 
C13 C14 PE5 sing 400 n n 
C13 H131 PE5 sing 401 n n 
C13 H132 PE5 sing 402 n n 
C14 O8 PE5 sing 403 n n 
C14 H141 PE5 sing 404 n n 
C14 H142 PE5 sing 405 n n 
O8 C15 PE5 sing 406 n n 
C15 C16 PE5 sing 407 n n 
C15 H151 PE5 sing 408 n n 
C15 H152 PE5 sing 409 n n 
C16 O52 PE5 sing 410 n n 
C16 H161 PE5 sing 411 n n 
C16 H162 PE5 sing 412 n n 
O52 H52 PE5 sing 413 n n 
#
_atom_sites.entry_id                     5D5D 
_atom_sites.fract_transf_matrix[1][1]    0.021584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 4 NA NA . 
C 2 NA A 1 502 5 NA NA . 
D 3 CA A 1 503 1 CA CA . 
E 4 LDA A 1 504 3 LDA LDA . 
F 4 LDA A 1 505 5 LDA LDA . 
G 4 LDA A 1 506 6 LDA LDA . 
H 4 LDA A 1 507 7 LDA LDA . 
I 4 LDA A 1 508 8 LDA LDA . 
J 4 LDA A 1 509 9 LDA LDA . 
K 4 LDA A 1 510 10 LDA LDA . 
L 5 PE5 A 1 511 1 PE5 PE5 . 
M 5 PE5 A 1 512 3 PE5 PE5 . 
N 5 PE5 A 1 513 4 PE5 PE5 . 
O 5 PE5 A 1 514 5 PE5 PE5 . 
P 5 PE5 A 1 515 6 PE5 PE5 . 
Q 6 78M A 1 516 1 78M 78M . 
R 6 78M A 1 517 2 78M 78M . 
S 7 MES A 1 518 2 MES MES . 
T 7 MES A 1 519 3 MES MES . 
U 8 HOH A 1 601 10 HOH HOH . 
U 8 HOH A 2 602 11 HOH HOH . 
U 8 HOH A 3 603 1 HOH HOH . 
U 8 HOH A 4 604 6 HOH HOH . 
U 8 HOH A 5 605 81 HOH HOH . 
U 8 HOH A 6 606 15 HOH HOH . 
U 8 HOH A 7 607 5 HOH HOH . 
U 8 HOH A 8 608 87 HOH HOH . 
U 8 HOH A 9 609 70 HOH HOH . 
U 8 HOH A 10 610 64 HOH HOH . 
U 8 HOH A 11 611 27 HOH HOH . 
U 8 HOH A 12 612 40 HOH HOH . 
U 8 HOH A 13 613 12 HOH HOH . 
U 8 HOH A 14 614 71 HOH HOH . 
U 8 HOH A 15 615 69 HOH HOH . 
U 8 HOH A 16 616 13 HOH HOH . 
U 8 HOH A 17 617 43 HOH HOH . 
U 8 HOH A 18 618 50 HOH HOH . 
U 8 HOH A 19 619 86 HOH HOH . 
U 8 HOH A 20 620 16 HOH HOH . 
U 8 HOH A 21 621 82 HOH HOH . 
U 8 HOH A 22 622 55 HOH HOH . 
U 8 HOH A 23 623 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 PE5 . . . N 5 143.54 159.94 37.961 1 75.78 ? C4 PE5 513 A 1 
HETATM 2 O O3 PE5 . . . N 5 144.631 160.624 38.517 1 77.16 ? O3 PE5 513 A 1 
HETATM 3 C C5 PE5 . . . N 5 144.318 161.697 39.435 1 74.53 ? C5 PE5 513 A 1 
HETATM 4 C C6 PE5 . . . N 5 145.646 162.31 39.985 1 71.01 ? C6 PE5 513 A 1 
HETATM 5 O O4 PE5 . . . N 5 145.517 162.665 41.378 1 66.68 ? O4 PE5 513 A 1 
HETATM 6 C C7 PE5 . . . N 5 146.643 162.403 42.178 1 62 ? C7 PE5 513 A 1 
HETATM 7 C C8 PE5 . . . N 5 146.201 162.168 43.667 1 60.69 ? C8 PE5 513 A 1 
HETATM 8 O O5 PE5 . . . N 5 146.238 160.801 44.014 1 60.53 ? O5 PE5 513 A 1 
HETATM 9 C C9 PE5 . . . N 5 147.304 160.445 44.863 1 58.91 ? C9 PE5 513 A 1 
HETATM 10 C C10 PE5 . . . N 5 147.305 158.913 45.167 1 57.33 ? C10 PE5 513 A 1 
HETATM 11 O O6 PE5 . . . N 5 148.422 158.251 44.5 1 56.05 ? O6 PE5 513 A 1 
HETATM 12 C C11 PE5 . . . N 5 149.626 158.077 45.312 1 55.97 ? C11 PE5 513 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           484 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#