data_5D5D # _model_server_result.job_id LZRr85xGfaQTrt5j1lMcwA _model_server_result.datetime_utc '2024-11-24 07:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":513}' # _entry.id 5D5D # _exptl.entry_id 5D5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D5D _cell.length_a 46.33 _cell.length_b 66.35 _cell.length_c 176.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc11 A OE1 GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc12 A O ASN 265 A ASN 265 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc13 A OD1 ASN 273 A ASN 273 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc14 A OG SER 304 A SER 304 1_555 D CA CA . A CA 503 3_1155 ? ? ? ? ? ? ? ? ? ? ? ? 32.126 ? metalc ? metalc15 A OD1 ASN 319 A ASN 319 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc16 A OE1 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc17 A OE2 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 350 n n C48 H481 PE5 sing 351 n n C48 H482 PE5 sing 352 n n C48 H483 PE5 sing 353 n n C50 O1 PE5 sing 354 n n C50 H501 PE5 sing 355 n n C50 H502 PE5 sing 356 n n O1 C1 PE5 sing 357 n n C1 C2 PE5 sing 358 n n C1 H11 PE5 sing 359 n n C1 H12 PE5 sing 360 n n C2 O2 PE5 sing 361 n n C2 H21 PE5 sing 362 n n C2 H22 PE5 sing 363 n n O2 C3 PE5 sing 364 n n C3 C4 PE5 sing 365 n n C3 H31 PE5 sing 366 n n C3 H32 PE5 sing 367 n n C4 O3 PE5 sing 368 n n C4 H41 PE5 sing 369 n n C4 H42 PE5 sing 370 n n O3 C5 PE5 sing 371 n n C5 C6 PE5 sing 372 n n C5 H51 PE5 sing 373 n n C5 H52A PE5 sing 374 n n C6 O4 PE5 sing 375 n n C6 H61 PE5 sing 376 n n C6 H62 PE5 sing 377 n n O4 C7 PE5 sing 378 n n C7 C8 PE5 sing 379 n n C7 H71 PE5 sing 380 n n C7 H72 PE5 sing 381 n n C8 O5 PE5 sing 382 n n C8 H81 PE5 sing 383 n n C8 H82 PE5 sing 384 n n O5 C9 PE5 sing 385 n n C9 C10 PE5 sing 386 n n C9 H91 PE5 sing 387 n n C9 H92 PE5 sing 388 n n C10 O6 PE5 sing 389 n n C10 H101 PE5 sing 390 n n C10 H102 PE5 sing 391 n n O6 C11 PE5 sing 392 n n C11 C12 PE5 sing 393 n n C11 H111 PE5 sing 394 n n C11 H112 PE5 sing 395 n n C12 O7 PE5 sing 396 n n C12 H121 PE5 sing 397 n n C12 H122 PE5 sing 398 n n O7 C13 PE5 sing 399 n n C13 C14 PE5 sing 400 n n C13 H131 PE5 sing 401 n n C13 H132 PE5 sing 402 n n C14 O8 PE5 sing 403 n n C14 H141 PE5 sing 404 n n C14 H142 PE5 sing 405 n n O8 C15 PE5 sing 406 n n C15 C16 PE5 sing 407 n n C15 H151 PE5 sing 408 n n C15 H152 PE5 sing 409 n n C16 O52 PE5 sing 410 n n C16 H161 PE5 sing 411 n n C16 H162 PE5 sing 412 n n O52 H52 PE5 sing 413 n n # _atom_sites.entry_id 5D5D _atom_sites.fract_transf_matrix[1][1] 0.021584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 4 NA NA . C 2 NA A 1 502 5 NA NA . D 3 CA A 1 503 1 CA CA . E 4 LDA A 1 504 3 LDA LDA . F 4 LDA A 1 505 5 LDA LDA . G 4 LDA A 1 506 6 LDA LDA . H 4 LDA A 1 507 7 LDA LDA . I 4 LDA A 1 508 8 LDA LDA . J 4 LDA A 1 509 9 LDA LDA . K 4 LDA A 1 510 10 LDA LDA . L 5 PE5 A 1 511 1 PE5 PE5 . M 5 PE5 A 1 512 3 PE5 PE5 . N 5 PE5 A 1 513 4 PE5 PE5 . O 5 PE5 A 1 514 5 PE5 PE5 . P 5 PE5 A 1 515 6 PE5 PE5 . Q 6 78M A 1 516 1 78M 78M . R 6 78M A 1 517 2 78M 78M . S 7 MES A 1 518 2 MES MES . T 7 MES A 1 519 3 MES MES . U 8 HOH A 1 601 10 HOH HOH . U 8 HOH A 2 602 11 HOH HOH . U 8 HOH A 3 603 1 HOH HOH . U 8 HOH A 4 604 6 HOH HOH . U 8 HOH A 5 605 81 HOH HOH . U 8 HOH A 6 606 15 HOH HOH . U 8 HOH A 7 607 5 HOH HOH . U 8 HOH A 8 608 87 HOH HOH . U 8 HOH A 9 609 70 HOH HOH . U 8 HOH A 10 610 64 HOH HOH . U 8 HOH A 11 611 27 HOH HOH . U 8 HOH A 12 612 40 HOH HOH . U 8 HOH A 13 613 12 HOH HOH . U 8 HOH A 14 614 71 HOH HOH . U 8 HOH A 15 615 69 HOH HOH . U 8 HOH A 16 616 13 HOH HOH . U 8 HOH A 17 617 43 HOH HOH . U 8 HOH A 18 618 50 HOH HOH . U 8 HOH A 19 619 86 HOH HOH . U 8 HOH A 20 620 16 HOH HOH . U 8 HOH A 21 621 82 HOH HOH . U 8 HOH A 22 622 55 HOH HOH . U 8 HOH A 23 623 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 PE5 . . . N 5 143.54 159.94 37.961 1 75.78 ? C4 PE5 513 A 1 HETATM 2 O O3 PE5 . . . N 5 144.631 160.624 38.517 1 77.16 ? O3 PE5 513 A 1 HETATM 3 C C5 PE5 . . . N 5 144.318 161.697 39.435 1 74.53 ? C5 PE5 513 A 1 HETATM 4 C C6 PE5 . . . N 5 145.646 162.31 39.985 1 71.01 ? C6 PE5 513 A 1 HETATM 5 O O4 PE5 . . . N 5 145.517 162.665 41.378 1 66.68 ? O4 PE5 513 A 1 HETATM 6 C C7 PE5 . . . N 5 146.643 162.403 42.178 1 62 ? C7 PE5 513 A 1 HETATM 7 C C8 PE5 . . . N 5 146.201 162.168 43.667 1 60.69 ? C8 PE5 513 A 1 HETATM 8 O O5 PE5 . . . N 5 146.238 160.801 44.014 1 60.53 ? O5 PE5 513 A 1 HETATM 9 C C9 PE5 . . . N 5 147.304 160.445 44.863 1 58.91 ? C9 PE5 513 A 1 HETATM 10 C C10 PE5 . . . N 5 147.305 158.913 45.167 1 57.33 ? C10 PE5 513 A 1 HETATM 11 O O6 PE5 . . . N 5 148.422 158.251 44.5 1 56.05 ? O6 PE5 513 A 1 HETATM 12 C C11 PE5 . . . N 5 149.626 158.077 45.312 1 55.97 ? C11 PE5 513 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #