data_5D5D # _model_server_result.job_id c_PVzg6vHzsZd2p1F8cuXw _model_server_result.datetime_utc '2024-11-24 08:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":516}' # _entry.id 5D5D # _exptl.entry_id 5D5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D5D _cell.length_a 46.33 _cell.length_b 66.35 _cell.length_c 176.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Q N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 A O ALA 61 A ALA 61 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A O GLY 63 A GLY 63 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 A O ALA 136 A ALA 136 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A O THR 139 A THR 139 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc9 A O TYR 141 A TYR 141 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc10 A O GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc11 A OE1 GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc12 A O ASN 265 A ASN 265 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc13 A OD1 ASN 273 A ASN 273 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc14 A OG SER 304 A SER 304 1_555 D CA CA . A CA 503 3_1155 ? ? ? ? ? ? ? ? ? ? ? ? 32.126 ? metalc ? metalc15 A OD1 ASN 319 A ASN 319 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc16 A OE1 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc17 A OE2 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 5D5D _atom_sites.fract_transf_matrix[1][1] 0.021584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 4 NA NA . C 2 NA A 1 502 5 NA NA . D 3 CA A 1 503 1 CA CA . E 4 LDA A 1 504 3 LDA LDA . F 4 LDA A 1 505 5 LDA LDA . G 4 LDA A 1 506 6 LDA LDA . H 4 LDA A 1 507 7 LDA LDA . I 4 LDA A 1 508 8 LDA LDA . J 4 LDA A 1 509 9 LDA LDA . K 4 LDA A 1 510 10 LDA LDA . L 5 PE5 A 1 511 1 PE5 PE5 . M 5 PE5 A 1 512 3 PE5 PE5 . N 5 PE5 A 1 513 4 PE5 PE5 . O 5 PE5 A 1 514 5 PE5 PE5 . P 5 PE5 A 1 515 6 PE5 PE5 . Q 6 78M A 1 516 1 78M 78M . R 6 78M A 1 517 2 78M 78M . S 7 MES A 1 518 2 MES MES . T 7 MES A 1 519 3 MES MES . U 8 HOH A 1 601 10 HOH HOH . U 8 HOH A 2 602 11 HOH HOH . U 8 HOH A 3 603 1 HOH HOH . U 8 HOH A 4 604 6 HOH HOH . U 8 HOH A 5 605 81 HOH HOH . U 8 HOH A 6 606 15 HOH HOH . U 8 HOH A 7 607 5 HOH HOH . U 8 HOH A 8 608 87 HOH HOH . U 8 HOH A 9 609 70 HOH HOH . U 8 HOH A 10 610 64 HOH HOH . U 8 HOH A 11 611 27 HOH HOH . U 8 HOH A 12 612 40 HOH HOH . U 8 HOH A 13 613 12 HOH HOH . U 8 HOH A 14 614 71 HOH HOH . U 8 HOH A 15 615 69 HOH HOH . U 8 HOH A 16 616 13 HOH HOH . U 8 HOH A 17 617 43 HOH HOH . U 8 HOH A 18 618 50 HOH HOH . U 8 HOH A 19 619 86 HOH HOH . U 8 HOH A 20 620 16 HOH HOH . U 8 HOH A 21 621 82 HOH HOH . U 8 HOH A 22 622 55 HOH HOH . U 8 HOH A 23 623 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . Q 6 155.822 175.031 31.955 1 93.26 ? O21 78M 516 A 1 HETATM 2 C C20 78M . . . Q 6 154.785 175.904 31.555 1 93.47 ? C20 78M 516 A 1 HETATM 3 C C18 78M . . . Q 6 155.042 176.461 30.166 1 93.12 ? C18 78M 516 A 1 HETATM 4 O O19 78M . . . Q 6 154.685 177.826 30.152 1 91.72 ? O19 78M 516 A 1 HETATM 5 C C17 78M . . . Q 6 154.182 175.714 29.164 1 93.5 ? C17 78M 516 A 1 HETATM 6 O O2 78M . . . Q 6 154.716 175.775 27.86 1 93.55 ? O2 78M 516 A 1 HETATM 7 C C1 78M . . . Q 6 155.043 174.568 27.196 1 93.69 ? C1 78M 516 A 1 HETATM 8 O O1 78M . . . Q 6 155.243 173.525 27.8 1 93.3 ? O1 78M 516 A 1 HETATM 9 C C2 78M . . . Q 6 155.208 174.6 25.688 1 93.81 ? C2 78M 516 A 1 HETATM 10 C C3 78M . . . Q 6 154.04 173.951 24.974 1 94.38 ? C3 78M 516 A 1 HETATM 11 C C4 78M . . . Q 6 154.577 173.083 23.855 1 94.84 ? C4 78M 516 A 1 HETATM 12 C C5 78M . . . Q 6 153.478 172.759 22.868 1 95.08 ? C5 78M 516 A 1 HETATM 13 C C6 78M . . . Q 6 154.066 172.564 21.485 1 95.53 ? C6 78M 516 A 1 HETATM 14 C C7 78M . . . Q 6 153.494 173.628 20.567 1 95.88 ? C7 78M 516 A 1 HETATM 15 C C8 78M . . . Q 6 153.469 173.576 19.213 1 95.55 ? C8 78M 516 A 1 HETATM 16 C C9 78M . . . Q 6 154.02 172.438 18.369 1 95.26 ? C9 78M 516 A 1 HETATM 17 C C10 78M . . . Q 6 153.31 172.373 17.026 1 94.54 ? C10 78M 516 A 1 HETATM 18 C C11 78M . . . Q 6 153.887 173.371 16.038 1 93.38 ? C11 78M 516 A 1 HETATM 19 C C12 78M . . . Q 6 154.823 172.68 15.062 1 92.19 ? C12 78M 516 A 1 HETATM 20 C C13 78M . . . Q 6 154.518 173.118 13.643 1 90.12 ? C13 78M 516 A 1 HETATM 21 C C15 78M . . . Q 6 154.767 175.31 12.538 1 87.03 ? C15 78M 516 A 1 HETATM 22 C C14 78M . . . Q 6 155.514 174.163 13.185 1 88.12 ? C14 78M 516 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #