data_5D5D
#
_model_server_result.job_id            5rVPomm6q5tA8byVfQeHXQ 
_model_server_result.datetime_utc      '2024-11-24 07:19:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":518}' 
#
_entry.id    5D5D 
#
_exptl.entry_id    5D5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D5D 
_cell.length_a            46.33 
_cell.length_b            66.35 
_cell.length_c            176.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 S N N 
? 7 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc7 A O ALA 136 A ALA 136 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc8 A O THR 139 A THR 139 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc9 A O TYR 141 A TYR 141 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc10 A O GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc11 A OE1 GLU 144 A GLU 144 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc12 A O ASN 265 A ASN 265 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc13 A OD1 ASN 273 A ASN 273 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc14 A OG SER 304 A SER 304 1_555 D CA CA . A CA 503 3_1155 ? ? ? ? ? ? ? ? ? ? ? ? 32.126 ? 
metalc ? metalc15 A OD1 ASN 319 A ASN 319 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? 
metalc ? metalc16 A OE1 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc17 A OE2 GLU 322 A GLU 322 1_555 B NA NA . A NA 501 4_595 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 306 n n 
O1 C6 MES sing 307 n n 
C2 C3 MES sing 308 n n 
C2 H21 MES sing 309 n n 
C2 H22 MES sing 310 n n 
C3 N4 MES sing 311 n n 
C3 H31 MES sing 312 n n 
C3 H32 MES sing 313 n n 
N4 C5 MES sing 314 n n 
N4 C7 MES sing 315 n n 
N4 HN4 MES sing 316 n n 
C5 C6 MES sing 317 n n 
C5 H51 MES sing 318 n n 
C5 H52 MES sing 319 n n 
C6 H61 MES sing 320 n n 
C6 H62 MES sing 321 n n 
C7 C8 MES sing 322 n n 
C7 H71 MES sing 323 n n 
C7 H72 MES sing 324 n n 
C8 S MES sing 325 n n 
C8 H81 MES sing 326 n n 
C8 H82 MES sing 327 n n 
S O1S MES doub 328 n n 
S O2S MES doub 329 n n 
S O3S MES sing 330 n n 
#
_atom_sites.entry_id                     5D5D 
_atom_sites.fract_transf_matrix[1][1]    0.021584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 4 NA NA . 
C 2 NA A 1 502 5 NA NA . 
D 3 CA A 1 503 1 CA CA . 
E 4 LDA A 1 504 3 LDA LDA . 
F 4 LDA A 1 505 5 LDA LDA . 
G 4 LDA A 1 506 6 LDA LDA . 
H 4 LDA A 1 507 7 LDA LDA . 
I 4 LDA A 1 508 8 LDA LDA . 
J 4 LDA A 1 509 9 LDA LDA . 
K 4 LDA A 1 510 10 LDA LDA . 
L 5 PE5 A 1 511 1 PE5 PE5 . 
M 5 PE5 A 1 512 3 PE5 PE5 . 
N 5 PE5 A 1 513 4 PE5 PE5 . 
O 5 PE5 A 1 514 5 PE5 PE5 . 
P 5 PE5 A 1 515 6 PE5 PE5 . 
Q 6 78M A 1 516 1 78M 78M . 
R 6 78M A 1 517 2 78M 78M . 
S 7 MES A 1 518 2 MES MES . 
T 7 MES A 1 519 3 MES MES . 
U 8 HOH A 1 601 10 HOH HOH . 
U 8 HOH A 2 602 11 HOH HOH . 
U 8 HOH A 3 603 1 HOH HOH . 
U 8 HOH A 4 604 6 HOH HOH . 
U 8 HOH A 5 605 81 HOH HOH . 
U 8 HOH A 6 606 15 HOH HOH . 
U 8 HOH A 7 607 5 HOH HOH . 
U 8 HOH A 8 608 87 HOH HOH . 
U 8 HOH A 9 609 70 HOH HOH . 
U 8 HOH A 10 610 64 HOH HOH . 
U 8 HOH A 11 611 27 HOH HOH . 
U 8 HOH A 12 612 40 HOH HOH . 
U 8 HOH A 13 613 12 HOH HOH . 
U 8 HOH A 14 614 71 HOH HOH . 
U 8 HOH A 15 615 69 HOH HOH . 
U 8 HOH A 16 616 13 HOH HOH . 
U 8 HOH A 17 617 43 HOH HOH . 
U 8 HOH A 18 618 50 HOH HOH . 
U 8 HOH A 19 619 86 HOH HOH . 
U 8 HOH A 20 620 16 HOH HOH . 
U 8 HOH A 21 621 82 HOH HOH . 
U 8 HOH A 22 622 55 HOH HOH . 
U 8 HOH A 23 623 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . S 7 129.118 158.076 31.074 1 57.26 ? O1 MES 518 A 1 
HETATM 2 C C2 MES . . . S 7 130.114 157.644 30.146 1 55.08 ? C2 MES 518 A 1 
HETATM 3 C C3 MES . . . S 7 131.474 158.197 30.499 1 56.07 ? C3 MES 518 A 1 
HETATM 4 N N4 MES . . . S 7 131.418 159.695 30.551 1 57.83 ? N4 MES 518 A 1 
HETATM 5 C C5 MES . . . S 7 130.332 160.141 31.482 1 58.35 ? C5 MES 518 A 1 
HETATM 6 C C6 MES . . . S 7 129.022 159.503 31.086 1 57.88 ? C6 MES 518 A 1 
HETATM 7 C C7 MES . . . S 7 132.747 160.359 30.807 1 54.96 ? C7 MES 518 A 1 
HETATM 8 C C8 MES . . . S 7 133.339 160.053 32.16 1 53.65 ? C8 MES 518 A 1 
HETATM 9 S S MES . . . S 7 134.832 160.94 32.543 1 51.91 ? S MES 518 A 1 
HETATM 10 O O1S MES . . . S 7 135.667 160.007 33.272 1 54.13 ? O1S MES 518 A 1 
HETATM 11 O O2S MES . . . S 7 135.419 161.335 31.278 1 50.94 ? O2S MES 518 A 1 
HETATM 12 O O3S MES . . . S 7 134.427 162.082 33.348 1 52.73 ? O3S MES 518 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           12 
#