data_5D5F
#
_model_server_result.job_id            S6GgzWx3ZQtbcRmTU7YPMw 
_model_server_result.datetime_utc      '2024-11-01 03:31:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":208}' 
#
_entry.id    5D5F 
#
_exptl.entry_id    5D5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D5F 
_cell.length_a            78.39 
_cell.length_b            78.39 
_cell.length_c            37.88 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc5 I NA NA . A NA 208 1_555 L O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 I NA NA . A NA 208 1_555 L O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D5F 
_atom_sites.fract_transf_matrix[1][1]    0.012757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BR A 1 201 1 BR BR . 
C 2 BR A 1 202 3 BR BR . 
D 2 BR A 1 203 4 BR BR . 
E 2 BR A 1 204 5 BR BR . 
F 2 BR A 1 205 6 BR BR . 
G 2 BR A 1 206 7 BR BR . 
H 2 BR A 1 207 8 BR BR . 
I 3 NA A 1 208 1 NA NA . 
J 4 ACY A 1 209 1 ACY ACY . 
K 5 PE5 A 1 210 1 PE5 PE5 . 
L 6 HOH A 1 301 80 HOH HOH . 
L 6 HOH A 2 302 95 HOH HOH . 
L 6 HOH A 3 303 61 HOH HOH . 
L 6 HOH A 4 304 72 HOH HOH . 
L 6 HOH A 5 305 73 HOH HOH . 
L 6 HOH A 6 306 51 HOH HOH . 
L 6 HOH A 7 307 110 HOH HOH . 
L 6 HOH A 8 308 9 HOH HOH . 
L 6 HOH A 9 309 48 HOH HOH . 
L 6 HOH A 10 310 63 HOH HOH . 
L 6 HOH A 11 311 106 HOH HOH . 
L 6 HOH A 12 312 98 HOH HOH . 
L 6 HOH A 13 313 30 HOH HOH . 
L 6 HOH A 14 314 76 HOH HOH . 
L 6 HOH A 15 315 105 HOH HOH . 
L 6 HOH A 16 316 20 HOH HOH . 
L 6 HOH A 17 317 19 HOH HOH . 
L 6 HOH A 18 318 38 HOH HOH . 
L 6 HOH A 19 319 10 HOH HOH . 
L 6 HOH A 20 320 45 HOH HOH . 
L 6 HOH A 21 321 26 HOH HOH . 
L 6 HOH A 22 322 46 HOH HOH . 
L 6 HOH A 23 323 32 HOH HOH . 
L 6 HOH A 24 324 119 HOH HOH . 
L 6 HOH A 25 325 60 HOH HOH . 
L 6 HOH A 26 326 59 HOH HOH . 
L 6 HOH A 27 327 124 HOH HOH . 
L 6 HOH A 28 328 3 HOH HOH . 
L 6 HOH A 29 329 47 HOH HOH . 
L 6 HOH A 30 330 117 HOH HOH . 
L 6 HOH A 31 331 29 HOH HOH . 
L 6 HOH A 32 332 94 HOH HOH . 
L 6 HOH A 33 333 121 HOH HOH . 
L 6 HOH A 34 334 42 HOH HOH . 
L 6 HOH A 35 335 2 HOH HOH . 
L 6 HOH A 36 336 24 HOH HOH . 
L 6 HOH A 37 337 5 HOH HOH . 
L 6 HOH A 38 338 90 HOH HOH . 
L 6 HOH A 39 339 50 HOH HOH . 
L 6 HOH A 40 340 14 HOH HOH . 
L 6 HOH A 41 341 35 HOH HOH . 
L 6 HOH A 42 342 75 HOH HOH . 
L 6 HOH A 43 343 43 HOH HOH . 
L 6 HOH A 44 344 71 HOH HOH . 
L 6 HOH A 45 345 56 HOH HOH . 
L 6 HOH A 46 346 66 HOH HOH . 
L 6 HOH A 47 347 65 HOH HOH . 
L 6 HOH A 48 348 8 HOH HOH . 
L 6 HOH A 49 349 69 HOH HOH . 
L 6 HOH A 50 350 123 HOH HOH . 
L 6 HOH A 51 351 36 HOH HOH . 
L 6 HOH A 52 352 68 HOH HOH . 
L 6 HOH A 53 353 96 HOH HOH . 
L 6 HOH A 54 354 122 HOH HOH . 
L 6 HOH A 55 355 102 HOH HOH . 
L 6 HOH A 56 356 77 HOH HOH . 
L 6 HOH A 57 357 134 HOH HOH . 
L 6 HOH A 58 358 33 HOH HOH . 
L 6 HOH A 59 359 25 HOH HOH . 
L 6 HOH A 60 360 16 HOH HOH . 
L 6 HOH A 61 361 58 HOH HOH . 
L 6 HOH A 62 362 53 HOH HOH . 
L 6 HOH A 63 363 81 HOH HOH . 
L 6 HOH A 64 364 57 HOH HOH . 
L 6 HOH A 65 365 64 HOH HOH . 
L 6 HOH A 66 366 15 HOH HOH . 
L 6 HOH A 67 367 113 HOH HOH . 
L 6 HOH A 68 368 87 HOH HOH . 
L 6 HOH A 69 369 89 HOH HOH . 
L 6 HOH A 70 370 4 HOH HOH . 
L 6 HOH A 71 371 148 HOH HOH . 
L 6 HOH A 72 372 52 HOH HOH . 
L 6 HOH A 73 373 114 HOH HOH . 
L 6 HOH A 74 374 21 HOH HOH . 
L 6 HOH A 75 375 39 HOH HOH . 
L 6 HOH A 76 376 104 HOH HOH . 
L 6 HOH A 77 377 18 HOH HOH . 
L 6 HOH A 78 378 13 HOH HOH . 
L 6 HOH A 79 379 27 HOH HOH . 
L 6 HOH A 80 380 34 HOH HOH . 
L 6 HOH A 81 381 139 HOH HOH . 
L 6 HOH A 82 382 54 HOH HOH . 
L 6 HOH A 83 383 74 HOH HOH . 
L 6 HOH A 84 384 130 HOH HOH . 
L 6 HOH A 85 385 67 HOH HOH . 
L 6 HOH A 86 386 109 HOH HOH . 
L 6 HOH A 87 387 31 HOH HOH . 
L 6 HOH A 88 388 41 HOH HOH . 
L 6 HOH A 89 389 145 HOH HOH . 
L 6 HOH A 90 390 1 HOH HOH . 
L 6 HOH A 91 391 49 HOH HOH . 
L 6 HOH A 92 392 40 HOH HOH . 
L 6 HOH A 93 393 126 HOH HOH . 
L 6 HOH A 94 394 143 HOH HOH . 
L 6 HOH A 95 395 93 HOH HOH . 
L 6 HOH A 96 396 115 HOH HOH . 
L 6 HOH A 97 397 17 HOH HOH . 
L 6 HOH A 98 398 44 HOH HOH . 
L 6 HOH A 99 399 7 HOH HOH . 
L 6 HOH A 100 400 84 HOH HOH . 
L 6 HOH A 101 401 83 HOH HOH . 
L 6 HOH A 102 402 22 HOH HOH . 
L 6 HOH A 103 403 112 HOH HOH . 
L 6 HOH A 104 404 99 HOH HOH . 
L 6 HOH A 105 405 138 HOH HOH . 
L 6 HOH A 106 406 79 HOH HOH . 
L 6 HOH A 107 407 127 HOH HOH . 
L 6 HOH A 108 408 85 HOH HOH . 
L 6 HOH A 109 409 70 HOH HOH . 
L 6 HOH A 110 410 37 HOH HOH . 
L 6 HOH A 111 411 86 HOH HOH . 
L 6 HOH A 112 412 118 HOH HOH . 
L 6 HOH A 113 413 11 HOH HOH . 
L 6 HOH A 114 414 149 HOH HOH . 
L 6 HOH A 115 415 12 HOH HOH . 
L 6 HOH A 116 416 151 HOH HOH . 
L 6 HOH A 117 417 144 HOH HOH . 
L 6 HOH A 118 418 152 HOH HOH . 
L 6 HOH A 119 419 153 HOH HOH . 
L 6 HOH A 120 420 132 HOH HOH . 
L 6 HOH A 121 421 6 HOH HOH . 
L 6 HOH A 122 422 147 HOH HOH . 
L 6 HOH A 123 423 136 HOH HOH . 
L 6 HOH A 124 424 78 HOH HOH . 
L 6 HOH A 125 425 135 HOH HOH . 
L 6 HOH A 126 426 23 HOH HOH . 
L 6 HOH A 127 427 108 HOH HOH . 
L 6 HOH A 128 428 28 HOH HOH . 
L 6 HOH A 129 429 88 HOH HOH . 
L 6 HOH A 130 430 120 HOH HOH . 
L 6 HOH A 131 431 133 HOH HOH . 
L 6 HOH A 132 432 97 HOH HOH . 
L 6 HOH A 133 433 103 HOH HOH . 
L 6 HOH A 134 434 128 HOH HOH . 
L 6 HOH A 135 435 100 HOH HOH . 
L 6 HOH A 136 436 92 HOH HOH . 
L 6 HOH A 137 437 129 HOH HOH . 
L 6 HOH A 138 438 82 HOH HOH . 
L 6 HOH A 139 439 55 HOH HOH . 
L 6 HOH A 140 440 101 HOH HOH . 
L 6 HOH A 141 441 107 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               149.034 
_atom_site.Cartn_y               142.732 
_atom_site.Cartn_z               50.588 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           208 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#