data_5D5V # _model_server_result.job_id tBwhF-H-thjCrJnecVow6g _model_server_result.datetime_utc '2024-11-29 14:19:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5D5V # _exptl.entry_id 5D5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.56 _cell.angle_gamma 90 _cell.entry_id 5D5V _cell.length_a 104.813 _cell.length_b 112.678 _cell.length_c 39.865 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 36 B LEU 25 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A O VAL 37 B VAL 26 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 A O ASP 39 B ASP 28 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 A OG1 THR 42 B THR 31 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 A OD1 ASP 43 B ASP 32 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A O ILE 46 B ILE 35 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc7 B O LEU 36 D LEU 25 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc8 B O VAL 37 D VAL 26 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 B O ASP 39 D ASP 28 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc10 B OG1 THR 42 D THR 31 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc11 B OD1 ASP 43 D ASP 32 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc12 B O ILE 46 D ILE 35 1_555 F MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? hydrog WATSON-CRICK hydrog1 C N3 DC 1 A DC 1 1_555 D N1 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 1 A DC 1 1_555 D O6 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 1 A DC 1 1_555 D N2 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DG 2 A DG 2 1_555 D N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N2 DG 2 A DG 2 1_555 D O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O6 DG 2 A DG 2 1_555 D N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N1 DG 3 A DG 3 1_555 D N3 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N2 DG 3 A DG 3 1_555 D O2 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C O6 DG 3 A DG 3 1_555 D N4 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N1 DA 4 A DA 4 1_555 D N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N6 DA 4 A DA 4 1_555 D O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N1 DA 5 A DA 5 1_555 D N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N6 DA 5 A DA 5 1_555 D O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 DT 6 A DT 6 1_555 D N1 DA 7 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O4 DT 6 A DT 6 1_555 D N6 DA 7 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 DG 7 A DG 7 1_555 D N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 DG 7 A DG 7 1_555 D O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 DG 7 A DG 7 1_555 D N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 DG 8 A DG 8 1_555 D N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N2 DG 8 A DG 8 1_555 D O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O6 DG 8 A DG 8 1_555 D N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 DA 9 A DA 9 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N6 DA 9 A DA 9 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N1 DA 10 A DA 10 1_555 D N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N6 DA 10 A DA 10 1_555 D O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DT 11 A DT 11 1_555 D N1 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O4 DT 11 A DT 11 1_555 D N6 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N1 DG 12 A DG 12 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N2 DG 12 A DG 12 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O6 DG 12 A DG 12 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5D5V _atom_sites.fract_transf_matrix[1][1] 0.009541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG B 1 201 201 MG MG . F 4 MG D 1 201 201 MG MG . G 5 HOH B 1 301 121 HOH HOH . G 5 HOH B 2 302 10 HOH HOH . G 5 HOH B 3 303 125 HOH HOH . G 5 HOH B 4 304 98 HOH HOH . G 5 HOH B 5 305 4 HOH HOH . G 5 HOH B 6 306 27 HOH HOH . G 5 HOH B 7 307 89 HOH HOH . G 5 HOH B 8 308 31 HOH HOH . G 5 HOH B 9 309 21 HOH HOH . G 5 HOH B 10 310 55 HOH HOH . G 5 HOH B 11 311 9 HOH HOH . G 5 HOH B 12 312 1 HOH HOH . G 5 HOH B 13 313 12 HOH HOH . G 5 HOH B 14 314 85 HOH HOH . G 5 HOH B 15 315 113 HOH HOH . G 5 HOH B 16 316 68 HOH HOH . G 5 HOH B 17 317 51 HOH HOH . G 5 HOH B 18 318 61 HOH HOH . G 5 HOH B 19 319 60 HOH HOH . G 5 HOH B 20 320 83 HOH HOH . G 5 HOH B 21 321 101 HOH HOH . G 5 HOH B 22 322 106 HOH HOH . G 5 HOH B 23 323 66 HOH HOH . G 5 HOH B 24 324 123 HOH HOH . G 5 HOH B 25 325 63 HOH HOH . G 5 HOH B 26 326 118 HOH HOH . H 5 HOH D 1 301 65 HOH HOH . H 5 HOH D 2 302 87 HOH HOH . H 5 HOH D 3 303 30 HOH HOH . H 5 HOH D 4 304 86 HOH HOH . H 5 HOH D 5 305 108 HOH HOH . H 5 HOH D 6 306 52 HOH HOH . H 5 HOH D 7 307 11 HOH HOH . H 5 HOH D 8 308 36 HOH HOH . H 5 HOH D 9 309 26 HOH HOH . H 5 HOH D 10 310 117 HOH HOH . H 5 HOH D 11 311 5 HOH HOH . H 5 HOH D 12 312 71 HOH HOH . H 5 HOH D 13 313 3 HOH HOH . H 5 HOH D 14 314 8 HOH HOH . H 5 HOH D 15 315 40 HOH HOH . H 5 HOH D 16 316 73 HOH HOH . H 5 HOH D 17 317 93 HOH HOH . H 5 HOH D 18 318 37 HOH HOH . H 5 HOH D 19 319 29 HOH HOH . H 5 HOH D 20 320 6 HOH HOH . H 5 HOH D 21 321 13 HOH HOH . H 5 HOH D 22 322 124 HOH HOH . H 5 HOH D 23 323 53 HOH HOH . H 5 HOH D 24 324 25 HOH HOH . H 5 HOH D 25 325 39 HOH HOH . H 5 HOH D 26 326 49 HOH HOH . H 5 HOH D 27 327 76 HOH HOH . H 5 HOH D 28 328 42 HOH HOH . H 5 HOH D 29 329 54 HOH HOH . H 5 HOH D 30 330 62 HOH HOH . H 5 HOH D 31 331 70 HOH HOH . H 5 HOH D 32 332 111 HOH HOH . H 5 HOH D 33 333 104 HOH HOH . H 5 HOH D 34 334 107 HOH HOH . H 5 HOH D 35 335 109 HOH HOH . I 5 HOH A 1 101 79 HOH HOH . I 5 HOH A 2 102 35 HOH HOH . I 5 HOH A 3 103 56 HOH HOH . I 5 HOH A 4 104 48 HOH HOH . I 5 HOH A 5 105 33 HOH HOH . I 5 HOH A 6 106 75 HOH HOH . I 5 HOH A 7 107 34 HOH HOH . I 5 HOH A 8 108 22 HOH HOH . I 5 HOH A 9 109 16 HOH HOH . I 5 HOH A 10 110 24 HOH HOH . I 5 HOH A 11 111 58 HOH HOH . I 5 HOH A 12 112 57 HOH HOH . I 5 HOH A 13 113 110 HOH HOH . I 5 HOH A 14 114 120 HOH HOH . I 5 HOH A 15 115 38 HOH HOH . I 5 HOH A 16 116 91 HOH HOH . I 5 HOH A 17 117 69 HOH HOH . I 5 HOH A 18 118 119 HOH HOH . I 5 HOH A 19 119 50 HOH HOH . I 5 HOH A 20 120 105 HOH HOH . I 5 HOH A 21 121 17 HOH HOH . I 5 HOH A 22 122 122 HOH HOH . I 5 HOH A 23 123 114 HOH HOH . I 5 HOH A 24 124 115 HOH HOH . J 5 HOH C 1 101 18 HOH HOH . J 5 HOH C 2 102 23 HOH HOH . J 5 HOH C 3 103 84 HOH HOH . J 5 HOH C 4 104 14 HOH HOH . J 5 HOH C 5 105 20 HOH HOH . J 5 HOH C 6 106 44 HOH HOH . J 5 HOH C 7 107 32 HOH HOH . J 5 HOH C 8 108 7 HOH HOH . J 5 HOH C 9 109 77 HOH HOH . J 5 HOH C 10 110 28 HOH HOH . J 5 HOH C 11 111 94 HOH HOH . J 5 HOH C 12 112 81 HOH HOH . J 5 HOH C 13 113 46 HOH HOH . J 5 HOH C 14 114 19 HOH HOH . J 5 HOH C 15 115 47 HOH HOH . J 5 HOH C 16 116 15 HOH HOH . J 5 HOH C 17 117 2 HOH HOH . J 5 HOH C 18 118 112 HOH HOH . J 5 HOH C 19 119 67 HOH HOH . J 5 HOH C 20 120 59 HOH HOH . J 5 HOH C 21 121 41 HOH HOH . J 5 HOH C 22 122 88 HOH HOH . J 5 HOH C 23 123 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.698 _atom_site.Cartn_y -14.572 _atom_site.Cartn_z -8.545 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #