data_5D6K # _model_server_result.job_id yvWtmiWqf31ZFeN-yh_EbQ _model_server_result.datetime_utc '2024-11-05 23:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5D6K # _exptl.entry_id 5D6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D6K _cell.length_a 101.69 _cell.length_b 110.91 _cell.length_c 112.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 363 n n P O2 PO4 sing 364 n n P O3 PO4 sing 365 n n P O4 PO4 sing 366 n n # _atom_sites.entry_id 5D6K _atom_sites.fract_transf_matrix[1][1] 0.009834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 3 97M A 1 502 2 97M 97M . D 3 97M A 1 503 3 97M 97M . E 4 97N A 1 504 4 97N 97M . F 3 97M A 1 505 5 97M 97M . G 3 97M A 1 506 6 97M 97M . H 3 97M A 1 507 7 97M 97M . I 4 97N A 1 508 8 97N 97M . J 3 97M A 1 509 10 97M 97M . K 3 97M A 1 510 11 97M 97M . L 3 97M A 1 511 12 97M 97M . M 5 HOH A 1 601 5 HOH HOH . M 5 HOH A 2 602 11 HOH HOH . M 5 HOH A 3 603 17 HOH HOH . M 5 HOH A 4 604 1 HOH HOH . M 5 HOH A 5 605 14 HOH HOH . M 5 HOH A 6 606 13 HOH HOH . M 5 HOH A 7 607 10 HOH HOH . M 5 HOH A 8 608 16 HOH HOH . M 5 HOH A 9 609 20 HOH HOH . M 5 HOH A 10 610 3 HOH HOH . M 5 HOH A 11 611 2 HOH HOH . M 5 HOH A 12 612 9 HOH HOH . M 5 HOH A 13 613 4 HOH HOH . M 5 HOH A 14 614 18 HOH HOH . M 5 HOH A 15 615 12 HOH HOH . M 5 HOH A 16 616 19 HOH HOH . M 5 HOH A 17 617 6 HOH HOH . M 5 HOH A 18 618 15 HOH HOH . M 5 HOH A 19 619 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 -46.719 -18.594 16.294 1 72.18 ? P PO4 501 A 1 HETATM 2 O O1 PO4 . . . B 2 -46.623 -18.236 14.834 1 70.65 ? O1 PO4 501 A 1 HETATM 3 O O2 PO4 . . . B 2 -48.14 -18.375 16.743 1 76.4 ? O2 PO4 501 A 1 HETATM 4 O O3 PO4 . . . B 2 -46.343 -20.044 16.46 1 66.25 ? O3 PO4 501 A 1 HETATM 5 O O4 PO4 . . . B 2 -45.804 -17.724 17.123 1 65.58 ? O4 PO4 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #