data_5D6K # _model_server_result.job_id mDTQ9Xzzuv44mevXSkvszQ _model_server_result.datetime_utc '2024-11-24 03:10:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5D6K # _exptl.entry_id 5D6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D6K _cell.length_a 101.69 _cell.length_b 110.91 _cell.length_c 112.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C19 H36 O4' _chem_comp.formula_weight 328.487 _chem_comp.id 97N _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 97N sing 59 n n C1 C2 97N sing 60 n n C2 C3 97N sing 61 n n C3 C4 97N sing 62 n n C4 C5 97N sing 63 n n C5 C6 97N sing 64 n n C6 C7 97N doub 65 z n C7 C8 97N sing 66 n n C8 C9 97N sing 67 n n C9 C10 97N sing 68 n n C10 C11 97N sing 69 n n C11 C12 97N sing 70 n n C12 C13 97N sing 71 n n C13 C14 97N sing 72 n n C14 C15 97N sing 73 n n O C15 97N doub 74 n n C15 O1 97N sing 75 n n O1 C16 97N sing 76 n n O2 C17 97N sing 77 n n C16 C17 97N sing 78 n n C17 C18 97N sing 79 n n C18 O3 97N sing 80 n n C H1 97N sing 81 n n C H2 97N sing 82 n n C H3 97N sing 83 n n C1 H4 97N sing 84 n n C1 H5 97N sing 85 n n C2 H6 97N sing 86 n n C2 H7 97N sing 87 n n O2 H8 97N sing 88 n n C3 H9 97N sing 89 n n C3 H10 97N sing 90 n n O3 H11 97N sing 91 n n C4 H12 97N sing 92 n n C4 H13 97N sing 93 n n C5 H14 97N sing 94 n n C5 H15 97N sing 95 n n C6 H16 97N sing 96 n n C7 H17 97N sing 97 n n C8 H18 97N sing 98 n n C8 H19 97N sing 99 n n C9 H20 97N sing 100 n n C9 H21 97N sing 101 n n C10 H22 97N sing 102 n n C10 H23 97N sing 103 n n C11 H24 97N sing 104 n n C11 H25 97N sing 105 n n C12 H26 97N sing 106 n n C12 H27 97N sing 107 n n C13 H28 97N sing 108 n n C13 H29 97N sing 109 n n C14 H30 97N sing 110 n n C14 H31 97N sing 111 n n C16 H32 97N sing 112 n n C16 H33 97N sing 113 n n C17 H34 97N sing 114 n n C18 H35 97N sing 115 n n C18 H36 97N sing 116 n n # _atom_sites.entry_id 5D6K _atom_sites.fract_transf_matrix[1][1] 0.009834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 3 97M A 1 502 2 97M 97M . D 3 97M A 1 503 3 97M 97M . E 4 97N A 1 504 4 97N 97M . F 3 97M A 1 505 5 97M 97M . G 3 97M A 1 506 6 97M 97M . H 3 97M A 1 507 7 97M 97M . I 4 97N A 1 508 8 97N 97M . J 3 97M A 1 509 10 97M 97M . K 3 97M A 1 510 11 97M 97M . L 3 97M A 1 511 12 97M 97M . M 5 HOH A 1 601 5 HOH HOH . M 5 HOH A 2 602 11 HOH HOH . M 5 HOH A 3 603 17 HOH HOH . M 5 HOH A 4 604 1 HOH HOH . M 5 HOH A 5 605 14 HOH HOH . M 5 HOH A 6 606 13 HOH HOH . M 5 HOH A 7 607 10 HOH HOH . M 5 HOH A 8 608 16 HOH HOH . M 5 HOH A 9 609 20 HOH HOH . M 5 HOH A 10 610 3 HOH HOH . M 5 HOH A 11 611 2 HOH HOH . M 5 HOH A 12 612 9 HOH HOH . M 5 HOH A 13 613 4 HOH HOH . M 5 HOH A 14 614 18 HOH HOH . M 5 HOH A 15 615 12 HOH HOH . M 5 HOH A 16 616 19 HOH HOH . M 5 HOH A 17 617 6 HOH HOH . M 5 HOH A 18 618 15 HOH HOH . M 5 HOH A 19 619 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 97N . . . E 4 2.306 -9.358 -0.018 1 66.08 ? C 97N 504 A 1 HETATM 2 O O 97N . . . E 4 -1.133 -14.591 13.973 1 74.88 ? O 97N 504 A 1 HETATM 3 C C1 97N . . . E 4 1.127 -10.253 0.3 1 77.71 ? C1 97N 504 A 1 HETATM 4 O O1 97N . . . E 4 0.704 -14.013 15.176 1 72.83 ? O1 97N 504 A 1 HETATM 5 C C2 97N . . . E 4 1.524 -11.697 0.527 1 74.13 ? C2 97N 504 A 1 HETATM 6 O O2 97N . . . E 4 0.141 -10.969 15.903 1 85.03 ? O2 97N 504 A 1 HETATM 7 C C3 97N . . . E 4 0.37 -12.537 1.032 1 74.71 ? C3 97N 504 A 1 HETATM 8 O O3 97N . . . E 4 0 -10.571 18.281 1 83.21 ? O3 97N 504 A 1 HETATM 9 C C4 97N . . . E 4 0.766 -13.485 2.144 1 64.27 ? C4 97N 504 A 1 HETATM 10 C C5 97N . . . E 4 -0.135 -13.326 3.349 1 66.47 ? C5 97N 504 A 1 HETATM 11 C C6 97N . . . E 4 -0.07 -14.502 4.3 1 69.75 ? C6 97N 504 A 1 HETATM 12 C C7 97N . . . E 4 -0.58 -14.397 5.546 1 69.71 ? C7 97N 504 A 1 HETATM 13 C C8 97N . . . E 4 -1.223 -13.109 6.013 1 62.12 ? C8 97N 504 A 1 HETATM 14 C C9 97N . . . E 4 -0.838 -12.777 7.438 1 67.54 ? C9 97N 504 A 1 HETATM 15 C C10 97N . . . E 4 -0.912 -13.994 8.334 1 64.61 ? C10 97N 504 A 1 HETATM 16 C C11 97N . . . E 4 0.067 -13.939 9.489 1 66.12 ? C11 97N 504 A 1 HETATM 17 C C12 97N . . . E 4 -0.611 -14.149 10.825 1 63.88 ? C12 97N 504 A 1 HETATM 18 C C13 97N . . . E 4 0.027 -15.267 11.622 1 63.94 ? C13 97N 504 A 1 HETATM 19 C C14 97N . . . E 4 0.893 -14.778 12.765 1 67.45 ? C14 97N 504 A 1 HETATM 20 C C15 97N . . . E 4 0.074 -14.459 13.999 1 71.4 ? C15 97N 504 A 1 HETATM 21 C C16 97N . . . E 4 -0.147 -13.347 16.084 1 74.4 ? C16 97N 504 A 1 HETATM 22 C C17 97N . . . E 4 0.579 -12.118 16.593 1 77.08 ? C17 97N 504 A 1 HETATM 23 C C18 97N . . . E 4 0.343 -11.925 18.076 1 74.49 ? C18 97N 504 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 992 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #