data_5D6K
#
_model_server_result.job_id            gtXcqPail8tslPONtPO3wQ 
_model_server_result.datetime_utc      '2024-11-27 20:05:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":508}' 
#
_entry.id    5D6K 
#
_exptl.entry_id    5D6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D6K 
_cell.length_a            101.69 
_cell.length_b            110.91 
_cell.length_c            112.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
_chem_comp.formula           'C19 H36 O4' 
_chem_comp.formula_weight    328.487 
_chem_comp.id                97N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 97N sing 59 n n 
C1 C2 97N sing 60 n n 
C2 C3 97N sing 61 n n 
C3 C4 97N sing 62 n n 
C4 C5 97N sing 63 n n 
C5 C6 97N sing 64 n n 
C6 C7 97N doub 65 z n 
C7 C8 97N sing 66 n n 
C8 C9 97N sing 67 n n 
C9 C10 97N sing 68 n n 
C10 C11 97N sing 69 n n 
C11 C12 97N sing 70 n n 
C12 C13 97N sing 71 n n 
C13 C14 97N sing 72 n n 
C14 C15 97N sing 73 n n 
O C15 97N doub 74 n n 
C15 O1 97N sing 75 n n 
O1 C16 97N sing 76 n n 
O2 C17 97N sing 77 n n 
C16 C17 97N sing 78 n n 
C17 C18 97N sing 79 n n 
C18 O3 97N sing 80 n n 
C H1 97N sing 81 n n 
C H2 97N sing 82 n n 
C H3 97N sing 83 n n 
C1 H4 97N sing 84 n n 
C1 H5 97N sing 85 n n 
C2 H6 97N sing 86 n n 
C2 H7 97N sing 87 n n 
O2 H8 97N sing 88 n n 
C3 H9 97N sing 89 n n 
C3 H10 97N sing 90 n n 
O3 H11 97N sing 91 n n 
C4 H12 97N sing 92 n n 
C4 H13 97N sing 93 n n 
C5 H14 97N sing 94 n n 
C5 H15 97N sing 95 n n 
C6 H16 97N sing 96 n n 
C7 H17 97N sing 97 n n 
C8 H18 97N sing 98 n n 
C8 H19 97N sing 99 n n 
C9 H20 97N sing 100 n n 
C9 H21 97N sing 101 n n 
C10 H22 97N sing 102 n n 
C10 H23 97N sing 103 n n 
C11 H24 97N sing 104 n n 
C11 H25 97N sing 105 n n 
C12 H26 97N sing 106 n n 
C12 H27 97N sing 107 n n 
C13 H28 97N sing 108 n n 
C13 H29 97N sing 109 n n 
C14 H30 97N sing 110 n n 
C14 H31 97N sing 111 n n 
C16 H32 97N sing 112 n n 
C16 H33 97N sing 113 n n 
C17 H34 97N sing 114 n n 
C18 H35 97N sing 115 n n 
C18 H36 97N sing 116 n n 
#
_atom_sites.entry_id                     5D6K 
_atom_sites.fract_transf_matrix[1][1]    0.009834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 3 97M A 1 502 2 97M 97M . 
D 3 97M A 1 503 3 97M 97M . 
E 4 97N A 1 504 4 97N 97M . 
F 3 97M A 1 505 5 97M 97M . 
G 3 97M A 1 506 6 97M 97M . 
H 3 97M A 1 507 7 97M 97M . 
I 4 97N A 1 508 8 97N 97M . 
J 3 97M A 1 509 10 97M 97M . 
K 3 97M A 1 510 11 97M 97M . 
L 3 97M A 1 511 12 97M 97M . 
M 5 HOH A 1 601 5 HOH HOH . 
M 5 HOH A 2 602 11 HOH HOH . 
M 5 HOH A 3 603 17 HOH HOH . 
M 5 HOH A 4 604 1 HOH HOH . 
M 5 HOH A 5 605 14 HOH HOH . 
M 5 HOH A 6 606 13 HOH HOH . 
M 5 HOH A 7 607 10 HOH HOH . 
M 5 HOH A 8 608 16 HOH HOH . 
M 5 HOH A 9 609 20 HOH HOH . 
M 5 HOH A 10 610 3 HOH HOH . 
M 5 HOH A 11 611 2 HOH HOH . 
M 5 HOH A 12 612 9 HOH HOH . 
M 5 HOH A 13 613 4 HOH HOH . 
M 5 HOH A 14 614 18 HOH HOH . 
M 5 HOH A 15 615 12 HOH HOH . 
M 5 HOH A 16 616 19 HOH HOH . 
M 5 HOH A 17 617 6 HOH HOH . 
M 5 HOH A 18 618 15 HOH HOH . 
M 5 HOH A 19 619 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 97N . . . I 4 0.561 -23.464 8.251 1 74.01 ? C 97N 508 A 1 
HETATM 2 O O 97N . . . I 4 -2.027 -28.774 20.603 1 77.4 ? O 97N 508 A 1 
HETATM 3 C C1 97N . . . I 4 1.834 -22.946 8.887 1 72.32 ? C1 97N 508 A 1 
HETATM 4 O O1 97N . . . I 4 -2.678 -28.534 22.769 1 67.76 ? O1 97N 508 A 1 
HETATM 5 C C2 97N . . . I 4 1.567 -22.092 10.108 1 66.57 ? C2 97N 508 A 1 
HETATM 6 O O2 97N . . . I 4 -1.732 -31.451 24.661 1 84.71 ? O2 97N 508 A 1 
HETATM 7 C C3 97N . . . I 4 0.704 -22.799 11.13 1 68.91 ? C3 97N 508 A 1 
HETATM 8 O O3 97N . . . I 4 -2.325 -29.529 26.315 1 77.95 ? O3 97N 508 A 1 
HETATM 9 C C4 97N . . . I 4 1.147 -24.226 11.364 1 75.73 ? C4 97N 508 A 1 
HETATM 10 C C5 97N . . . I 4 0.272 -24.942 12.37 1 75.32 ? C5 97N 508 A 1 
HETATM 11 C C6 97N . . . I 4 1.005 -25.218 13.665 1 75.76 ? C6 97N 508 A 1 
HETATM 12 C C7 97N . . . I 4 0.337 -25.692 14.736 1 74.66 ? C7 97N 508 A 1 
HETATM 13 C C8 97N . . . I 4 -1.152 -25.949 14.652 1 66.59 ? C8 97N 508 A 1 
HETATM 14 C C9 97N . . . I 4 -1.552 -27.166 15.454 1 67.68 ? C9 97N 508 A 1 
HETATM 15 C C10 97N . . . I 4 -1.043 -27.076 16.875 1 62.72 ? C10 97N 508 A 1 
HETATM 16 C C11 97N . . . I 4 -1.524 -25.811 17.549 1 54.68 ? C11 97N 508 A 1 
HETATM 17 C C12 97N . . . I 4 -1.409 -25.891 19.054 1 58.8 ? C12 97N 508 A 1 
HETATM 18 C C13 97N . . . I 4 -2.712 -26.283 19.713 1 56.17 ? C13 97N 508 A 1 
HETATM 19 C C14 97N . . . I 4 -2.549 -26.552 21.194 1 53.75 ? C14 97N 508 A 1 
HETATM 20 C C15 97N . . . I 4 -2.396 -28.029 21.488 1 63.74 ? C15 97N 508 A 1 
HETATM 21 C C16 97N . . . I 4 -1.841 -29.592 23.162 1 67.76 ? C16 97N 508 A 1 
HETATM 22 C C17 97N . . . I 4 -2.599 -30.475 24.126 1 75.05 ? C17 97N 508 A 1 
HETATM 23 C C18 97N . . . I 4 -3.232 -29.656 25.236 1 75.66 ? C18 97N 508 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#