data_5D6K
#
_model_server_result.job_id            rgnoPr299V1QYYxs8PIWJg 
_model_server_result.datetime_utc      '2024-11-05 23:13:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    5D6K 
#
_exptl.entry_id    5D6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D6K 
_cell.length_a            101.69 
_cell.length_b            110.91 
_cell.length_c            112.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C19 H36 O4' 
_chem_comp.formula_weight    328.487 
_chem_comp.id                97M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C15 97M sing 1 n n 
C15 C14 97M sing 2 n n 
C14 C13 97M sing 3 n n 
C13 C12 97M sing 4 n n 
C12 C11 97M sing 5 n n 
C11 C10 97M sing 6 n n 
C10 C9 97M doub 7 z n 
C9 C8 97M sing 8 n n 
C8 C7 97M sing 9 n n 
C7 C6 97M sing 10 n n 
C6 C5 97M sing 11 n n 
C5 C4 97M sing 12 n n 
C4 C3 97M sing 13 n n 
C3 C2 97M sing 14 n n 
C2 C1 97M sing 15 n n 
O19 C1 97M doub 16 n n 
C1 O20 97M sing 17 n n 
O20 C21 97M sing 18 n n 
C21 C22 97M sing 19 n n 
C22 C24 97M sing 20 n n 
C22 O23 97M sing 21 n n 
C24 O25 97M sing 22 n n 
C19 H1 97M sing 23 n n 
C19 H2 97M sing 24 n n 
C19 H3 97M sing 25 n n 
C8 H4 97M sing 26 n n 
C8 H5 97M sing 27 n n 
C7 H6 97M sing 28 n n 
C7 H7 97M sing 29 n n 
C15 H8 97M sing 30 n n 
C15 H9 97M sing 31 n n 
C9 H10 97M sing 32 n n 
C6 H11 97M sing 33 n n 
C6 H12 97M sing 34 n n 
C21 H13 97M sing 35 n n 
C21 H14 97M sing 36 n n 
C14 H15 97M sing 37 n n 
C14 H16 97M sing 38 n n 
C10 H17 97M sing 39 n n 
C5 H18 97M sing 40 n n 
C5 H19 97M sing 41 n n 
C13 H20 97M sing 42 n n 
C13 H21 97M sing 43 n n 
C11 H22 97M sing 44 n n 
C11 H23 97M sing 45 n n 
C4 H24 97M sing 46 n n 
C4 H25 97M sing 47 n n 
C12 H26 97M sing 48 n n 
C12 H27 97M sing 49 n n 
C3 H28 97M sing 50 n n 
C3 H29 97M sing 51 n n 
C2 H30 97M sing 52 n n 
C2 H31 97M sing 53 n n 
C24 H32 97M sing 54 n n 
C24 H33 97M sing 55 n n 
C22 H34 97M sing 56 n n 
O23 H35 97M sing 57 n n 
O25 H36 97M sing 58 n n 
#
_atom_sites.entry_id                     5D6K 
_atom_sites.fract_transf_matrix[1][1]    0.009834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 3 97M A 1 502 2 97M 97M . 
D 3 97M A 1 503 3 97M 97M . 
E 4 97N A 1 504 4 97N 97M . 
F 3 97M A 1 505 5 97M 97M . 
G 3 97M A 1 506 6 97M 97M . 
H 3 97M A 1 507 7 97M 97M . 
I 4 97N A 1 508 8 97N 97M . 
J 3 97M A 1 509 10 97M 97M . 
K 3 97M A 1 510 11 97M 97M . 
L 3 97M A 1 511 12 97M 97M . 
M 5 HOH A 1 601 5 HOH HOH . 
M 5 HOH A 2 602 11 HOH HOH . 
M 5 HOH A 3 603 17 HOH HOH . 
M 5 HOH A 4 604 1 HOH HOH . 
M 5 HOH A 5 605 14 HOH HOH . 
M 5 HOH A 6 606 13 HOH HOH . 
M 5 HOH A 7 607 10 HOH HOH . 
M 5 HOH A 8 608 16 HOH HOH . 
M 5 HOH A 9 609 20 HOH HOH . 
M 5 HOH A 10 610 3 HOH HOH . 
M 5 HOH A 11 611 2 HOH HOH . 
M 5 HOH A 12 612 9 HOH HOH . 
M 5 HOH A 13 613 4 HOH HOH . 
M 5 HOH A 14 614 18 HOH HOH . 
M 5 HOH A 15 615 12 HOH HOH . 
M 5 HOH A 16 616 19 HOH HOH . 
M 5 HOH A 17 617 6 HOH HOH . 
M 5 HOH A 18 618 15 HOH HOH . 
M 5 HOH A 19 619 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C19 97M . . . J 3 3.877 -33.389 8.954 1 65.03 ? C19 97M 509 A 1 
HETATM 2 C C8 97M . . . J 3 3.789 -34.599 0.379 1 62.97 ? C8 97M 509 A 1 
HETATM 3 C C7 97M . . . J 3 2.993 -35.437 -0.597 1 66.35 ? C7 97M 509 A 1 
HETATM 4 C C15 97M . . . J 3 4.371 -34.363 7.907 1 62.15 ? C15 97M 509 A 1 
HETATM 5 C C9 97M . . . J 3 3.056 -33.341 0.791 1 72.27 ? C9 97M 509 A 1 
HETATM 6 C C6 97M . . . J 3 2.7 -34.696 -1.883 1 68.33 ? C6 97M 509 A 1 
HETATM 7 C C21 97M . . . J 3 1.518 -36.998 -9.253 1 76.32 ? C21 97M 509 A 1 
HETATM 8 C C14 97M . . . J 3 3.36 -34.563 6.799 1 64.1 ? C14 97M 509 A 1 
HETATM 9 C C10 97M . . . J 3 3.116 -32.933 2.074 1 73.91 ? C10 97M 509 A 1 
HETATM 10 C C5 97M . . . J 3 2.285 -35.633 -2.996 1 71.74 ? C5 97M 509 A 1 
HETATM 11 C C13 97M . . . J 3 4.002 -34.61 5.43 1 57.49 ? C13 97M 509 A 1 
HETATM 12 C C11 97M . . . J 3 3.916 -33.744 3.07 1 69.07 ? C11 97M 509 A 1 
HETATM 13 C C4 97M . . . J 3 1.892 -34.889 -4.253 1 75.16 ? C4 97M 509 A 1 
HETATM 14 C C12 97M . . . J 3 3.41 -33.585 4.487 1 70.96 ? C12 97M 509 A 1 
HETATM 15 C C3 97M . . . J 3 2.501 -35.495 -5.498 1 72.34 ? C3 97M 509 A 1 
HETATM 16 C C2 97M . . . J 3 2.309 -36.991 -5.566 1 71.1 ? C2 97M 509 A 1 
HETATM 17 C C24 97M . . . J 3 1.086 -34.801 -10.325 1 74.39 ? C24 97M 509 A 1 
HETATM 18 C C22 97M . . . J 3 0.518 -36.176 -10.037 1 78.88 ? C22 97M 509 A 1 
HETATM 19 O O19 97M . . . J 3 2.38 -38.566 -7.328 1 84.06 ? O19 97M 509 A 1 
HETATM 20 C C1 97M . . . J 3 2.085 -37.437 -6.992 1 76.19 ? C1 97M 509 A 1 
HETATM 21 O O20 97M . . . J 3 1.534 -36.535 -7.921 1 77.92 ? O20 97M 509 A 1 
HETATM 22 O O23 97M . . . J 3 0.216 -36.834 -11.244 1 84.71 ? O23 97M 509 A 1 
HETATM 23 O O25 97M . . . J 3 0.055 -33.987 -10.846 1 78.98 ? O25 97M 509 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#