data_5D6K # _model_server_result.job_id I_TQQudB0N3SrjcNmJ1qcg _model_server_result.datetime_utc '2024-11-05 23:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":510}' # _entry.id 5D6K # _exptl.entry_id 5D6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D6K _cell.length_a 101.69 _cell.length_b 110.91 _cell.length_c 112.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C19 H36 O4' _chem_comp.formula_weight 328.487 _chem_comp.id 97M _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C15 97M sing 1 n n C15 C14 97M sing 2 n n C14 C13 97M sing 3 n n C13 C12 97M sing 4 n n C12 C11 97M sing 5 n n C11 C10 97M sing 6 n n C10 C9 97M doub 7 z n C9 C8 97M sing 8 n n C8 C7 97M sing 9 n n C7 C6 97M sing 10 n n C6 C5 97M sing 11 n n C5 C4 97M sing 12 n n C4 C3 97M sing 13 n n C3 C2 97M sing 14 n n C2 C1 97M sing 15 n n O19 C1 97M doub 16 n n C1 O20 97M sing 17 n n O20 C21 97M sing 18 n n C21 C22 97M sing 19 n n C22 C24 97M sing 20 n n C22 O23 97M sing 21 n n C24 O25 97M sing 22 n n C19 H1 97M sing 23 n n C19 H2 97M sing 24 n n C19 H3 97M sing 25 n n C8 H4 97M sing 26 n n C8 H5 97M sing 27 n n C7 H6 97M sing 28 n n C7 H7 97M sing 29 n n C15 H8 97M sing 30 n n C15 H9 97M sing 31 n n C9 H10 97M sing 32 n n C6 H11 97M sing 33 n n C6 H12 97M sing 34 n n C21 H13 97M sing 35 n n C21 H14 97M sing 36 n n C14 H15 97M sing 37 n n C14 H16 97M sing 38 n n C10 H17 97M sing 39 n n C5 H18 97M sing 40 n n C5 H19 97M sing 41 n n C13 H20 97M sing 42 n n C13 H21 97M sing 43 n n C11 H22 97M sing 44 n n C11 H23 97M sing 45 n n C4 H24 97M sing 46 n n C4 H25 97M sing 47 n n C12 H26 97M sing 48 n n C12 H27 97M sing 49 n n C3 H28 97M sing 50 n n C3 H29 97M sing 51 n n C2 H30 97M sing 52 n n C2 H31 97M sing 53 n n C24 H32 97M sing 54 n n C24 H33 97M sing 55 n n C22 H34 97M sing 56 n n O23 H35 97M sing 57 n n O25 H36 97M sing 58 n n # _atom_sites.entry_id 5D6K _atom_sites.fract_transf_matrix[1][1] 0.009834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 3 97M A 1 502 2 97M 97M . D 3 97M A 1 503 3 97M 97M . E 4 97N A 1 504 4 97N 97M . F 3 97M A 1 505 5 97M 97M . G 3 97M A 1 506 6 97M 97M . H 3 97M A 1 507 7 97M 97M . I 4 97N A 1 508 8 97N 97M . J 3 97M A 1 509 10 97M 97M . K 3 97M A 1 510 11 97M 97M . L 3 97M A 1 511 12 97M 97M . M 5 HOH A 1 601 5 HOH HOH . M 5 HOH A 2 602 11 HOH HOH . M 5 HOH A 3 603 17 HOH HOH . M 5 HOH A 4 604 1 HOH HOH . M 5 HOH A 5 605 14 HOH HOH . M 5 HOH A 6 606 13 HOH HOH . M 5 HOH A 7 607 10 HOH HOH . M 5 HOH A 8 608 16 HOH HOH . M 5 HOH A 9 609 20 HOH HOH . M 5 HOH A 10 610 3 HOH HOH . M 5 HOH A 11 611 2 HOH HOH . M 5 HOH A 12 612 9 HOH HOH . M 5 HOH A 13 613 4 HOH HOH . M 5 HOH A 14 614 18 HOH HOH . M 5 HOH A 15 615 12 HOH HOH . M 5 HOH A 16 616 19 HOH HOH . M 5 HOH A 17 617 6 HOH HOH . M 5 HOH A 18 618 15 HOH HOH . M 5 HOH A 19 619 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 97M . . . K 3 -0.427 -27.168 7.525 1 65.71 ? C19 97M 510 A 1 HETATM 2 C C8 97M . . . K 3 -3.8 -32.18 12.858 1 61.84 ? C8 97M 510 A 1 HETATM 3 C C7 97M . . . K 3 -5.062 -32.728 13.488 1 55.44 ? C7 97M 510 A 1 HETATM 4 C C15 97M . . . K 3 -0.902 -28.526 7.999 1 69.88 ? C15 97M 510 A 1 HETATM 5 C C9 97M . . . K 3 -3.747 -32.403 11.362 1 63.54 ? C9 97M 510 A 1 HETATM 6 C C6 97M . . . K 3 -5.034 -34.233 13.623 1 63.66 ? C6 97M 510 A 1 HETATM 7 C C21 97M . . . K 3 -10.306 -35.663 19.686 1 79.88 ? C21 97M 510 A 1 HETATM 8 C C14 97M . . . K 3 -0.861 -29.566 6.899 1 72.24 ? C14 97M 510 A 1 HETATM 9 C C10 97M . . . K 3 -2.757 -31.832 10.647 1 66.89 ? C10 97M 510 A 1 HETATM 10 C C5 97M . . . K 3 -6.026 -34.722 14.652 1 64.84 ? C5 97M 510 A 1 HETATM 11 C C13 97M . . . K 3 -1.75 -30.753 7.196 1 64.8 ? C13 97M 510 A 1 HETATM 12 C C11 97M . . . K 3 -2.678 -32.037 9.151 1 66.25 ? C11 97M 510 A 1 HETATM 13 C C4 97M . . . K 3 -5.575 -34.41 16.062 1 69.73 ? C4 97M 510 A 1 HETATM 14 C C12 97M . . . K 3 -1.467 -31.353 8.555 1 61.58 ? C12 97M 510 A 1 HETATM 15 C C3 97M . . . K 3 -6.722 -33.961 16.944 1 73.12 ? C3 97M 510 A 1 HETATM 16 C C2 97M . . . K 3 -7.945 -34.845 16.815 1 77.84 ? C2 97M 510 A 1 HETATM 17 C C24 97M . . . K 3 -12.57 -36.67 19.964 1 84.5 ? C24 97M 510 A 1 HETATM 18 C C22 97M . . . K 3 -11.076 -36.938 19.988 1 85.87 ? C22 97M 510 A 1 HETATM 19 O O19 97M . . . K 3 -9.019 -33.619 18.523 1 78.55 ? O19 97M 510 A 1 HETATM 20 C C1 97M . . . K 3 -8.879 -34.709 18.002 1 80.8 ? C1 97M 510 A 1 HETATM 21 O O20 97M . . . K 3 -9.572 -35.841 18.49 1 81.72 ? O20 97M 510 A 1 HETATM 22 O O23 97M . . . K 3 -10.753 -37.918 19.026 1 83.13 ? O23 97M 510 A 1 HETATM 23 O O25 97M . . . K 3 -13.245 -37.859 19.6 1 85.22 ? O25 97M 510 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #