data_5D6L # _model_server_result.job_id Qrs0O3t_KvgO9ZpRSlvznA _model_server_result.datetime_utc '2024-11-23 21:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1215}' # _entry.id 5D6L # _exptl.entry_id 5D6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.67 _cell.angle_gamma 90 _cell.entry_id 5D6L _cell.length_a 107.26 _cell.length_b 170.36 _cell.length_c 40.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 401 MAL 2 n B GLC 2 B 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 L C2 ACM . A ACM 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? covale ? covale2 A SG CYS 476 A CYS 341 1_555 P C1 PLM . A PLM 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 sing # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 538 n n C1 O2 PLM doub 539 n n C1 C2 PLM sing 540 n n O1 H PLM sing 541 n n C2 C3 PLM sing 542 n n C2 H21 PLM sing 543 n n C2 H22 PLM sing 544 n n C3 C4 PLM sing 545 n n C3 H31 PLM sing 546 n n C3 H32 PLM sing 547 n n C4 C5 PLM sing 548 n n C4 H41 PLM sing 549 n n C4 H42 PLM sing 550 n n C5 C6 PLM sing 551 n n C5 H51 PLM sing 552 n n C5 H52 PLM sing 553 n n C6 C7 PLM sing 554 n n C6 H61 PLM sing 555 n n C6 H62 PLM sing 556 n n C7 C8 PLM sing 557 n n C7 H71 PLM sing 558 n n C7 H72 PLM sing 559 n n C8 C9 PLM sing 560 n n C8 H81 PLM sing 561 n n C8 H82 PLM sing 562 n n C9 CA PLM sing 563 n n C9 H91 PLM sing 564 n n C9 H92 PLM sing 565 n n CA CB PLM sing 566 n n CA HA1 PLM sing 567 n n CA HA2 PLM sing 568 n n CB CC PLM sing 569 n n CB HB1 PLM sing 570 n n CB HB2 PLM sing 571 n n CC CD PLM sing 572 n n CC HC1 PLM sing 573 n n CC HC2 PLM sing 574 n n CD CE PLM sing 575 n n CD HD1 PLM sing 576 n n CD HD2 PLM sing 577 n n CE CF PLM sing 578 n n CE HE1 PLM sing 579 n n CE HE2 PLM sing 580 n n CF CG PLM sing 581 n n CF HF1 PLM sing 582 n n CF HF2 PLM sing 583 n n CG HG1 PLM sing 584 n n CG HG2 PLM sing 585 n n CG HG3 PLM sing 586 n n # _atom_sites.entry_id 5D6L _atom_sites.fract_transf_matrix[1][1] 0.009323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002615 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1202 402 SO4 SO4 . D 3 SO4 A 1 1203 403 SO4 SO4 . E 3 SO4 A 1 1204 404 SO4 SO4 . F 3 SO4 A 1 1205 405 SO4 SO4 . G 3 SO4 A 1 1206 406 SO4 SO4 . H 3 SO4 A 1 1207 407 SO4 SO4 . I 4 CAU A 1 1208 408 CAU CAU . J 5 BU1 A 1 1209 409 BU1 BU1 . K 5 BU1 A 1 1210 410 BU1 BU1 . L 6 ACM A 1 1211 411 ACM ACM . M 7 CLR A 1 1212 412 CLR CLR . N 7 CLR A 1 1213 413 CLR CLR . O 7 CLR A 1 1214 414 CLR CLR . P 8 PLM A 1 1215 415 PLM PLM . Q 9 12P A 1 1216 416 12P 12P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . P 8 -4.463 32.981 4.994 1 102.06 ? C1 PLM 1215 A 1 HETATM 2 O O2 PLM . . . P 8 -3.529 32.886 4.199 1 102.17 ? O2 PLM 1215 A 1 HETATM 3 C C2 PLM . . . P 8 -4.932 31.649 5.588 1 90.69 ? C2 PLM 1215 A 1 HETATM 4 C C3 PLM . . . P 8 -5.949 30.868 4.709 1 79.79 ? C3 PLM 1215 A 1 HETATM 5 C C4 PLM . . . P 8 -5.328 29.725 3.849 1 85.54 ? C4 PLM 1215 A 1 HETATM 6 C C5 PLM . . . P 8 -6.252 28.499 3.78 1 81.82 ? C5 PLM 1215 A 1 HETATM 7 C C6 PLM . . . P 8 -5.964 27.562 2.611 1 77.24 ? C6 PLM 1215 A 1 HETATM 8 C C7 PLM . . . P 8 -6.733 26.236 2.7 1 75.12 ? C7 PLM 1215 A 1 HETATM 9 C C8 PLM . . . P 8 -5.769 25.038 2.696 1 82.36 ? C8 PLM 1215 A 1 HETATM 10 C C9 PLM . . . P 8 -6.441 23.657 2.67 1 85.42 ? C9 PLM 1215 A 1 HETATM 11 C CA PLM . . . P 8 -5.459 22.591 3.162 1 83.13 ? CA PLM 1215 A 1 HETATM 12 C CB PLM . . . P 8 -5.841 21.174 2.744 1 80.07 ? CB PLM 1215 A 1 HETATM 13 C CC PLM . . . P 8 -4.643 20.463 2.122 1 81.77 ? CC PLM 1215 A 1 HETATM 14 C CD PLM . . . P 8 -4.308 19.181 2.876 1 90.36 ? CD PLM 1215 A 1 HETATM 15 C CE PLM . . . P 8 -3.437 18.273 2.02 1 91.17 ? CE PLM 1215 A 1 HETATM 16 C CF PLM . . . P 8 -3.219 16.939 2.718 1 92.26 ? CF PLM 1215 A 1 HETATM 17 C CG PLM . . . P 8 -2.531 15.958 1.797 1 90.32 ? CG PLM 1215 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 17 #