data_5D6P # _model_server_result.job_id Z-cUO57QKIuoJjUgQsf64w _model_server_result.datetime_utc '2024-10-18 12:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5D6P # _exptl.entry_id 5D6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.319 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-3-[4-(hydroxymethyl)-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.73 _cell.angle_gamma 90 _cell.entry_id 5D6P _cell.length_a 144.539 _cell.length_b 55.556 _cell.length_c 51.113 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C11 H14 N4 O2 S' _chem_comp.formula_weight 266.319 _chem_comp.id 57U _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-3-[4-(hydroxymethyl)-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 57U sing 1 n n C11 C10 57U sing 2 n n N9 C10 57U sing 3 n y N9 C8 57U doub 4 n y C10 C6 57U doub 5 n y N13 C8 57U sing 6 n n N13 C14 57U sing 7 n n C8 S7 57U sing 8 n y N15 C14 57U sing 9 n n N15 C16 57U sing 10 n n C14 O18 57U doub 11 n n C6 S7 57U sing 12 n y C6 C5 57U sing 13 n n N1 C5 57U sing 14 n y N1 C2 57U sing 15 n y C17 C16 57U sing 16 n n C5 C4 57U doub 17 n y C2 C3 57U doub 18 n y C4 C3 57U sing 19 n y C4 H1 57U sing 20 n n C3 H2 57U sing 21 n n C2 H3 57U sing 22 n n N1 H4 57U sing 23 n n C11 H5 57U sing 24 n n C11 H6 57U sing 25 n n N15 H7 57U sing 26 n n C16 H8 57U sing 27 n n C16 H9 57U sing 28 n n C17 H10 57U sing 29 n n C17 H11 57U sing 30 n n C17 H12 57U sing 31 n n N13 H13 57U sing 32 n n O12 H14 57U sing 33 n n # _atom_sites.entry_id 5D6P _atom_sites.fract_transf_matrix[1][1] 0.006919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 57U A 1 301 1 57U EVO . D 3 MPD A 1 302 1 MPD MPD . E 4 GOL A 1 303 1 GOL GOL . F 2 57U B 1 301 2 57U EVO . G 3 MPD B 1 302 2 MPD MPD . H 3 MPD B 1 303 3 MPD MPD . I 5 HOH A 1 401 45 HOH HOH . I 5 HOH A 2 402 104 HOH HOH . I 5 HOH A 3 403 40 HOH HOH . I 5 HOH A 4 404 113 HOH HOH . I 5 HOH A 5 405 66 HOH HOH . I 5 HOH A 6 406 126 HOH HOH . I 5 HOH A 7 407 108 HOH HOH . I 5 HOH A 8 408 56 HOH HOH . I 5 HOH A 9 409 115 HOH HOH . I 5 HOH A 10 410 24 HOH HOH . I 5 HOH A 11 411 94 HOH HOH . I 5 HOH A 12 412 34 HOH HOH . I 5 HOH A 13 413 61 HOH HOH . I 5 HOH A 14 414 5 HOH HOH . I 5 HOH A 15 415 13 HOH HOH . I 5 HOH A 16 416 16 HOH HOH . I 5 HOH A 17 417 57 HOH HOH . I 5 HOH A 18 418 125 HOH HOH . I 5 HOH A 19 419 20 HOH HOH . I 5 HOH A 20 420 128 HOH HOH . I 5 HOH A 21 421 44 HOH HOH . I 5 HOH A 22 422 29 HOH HOH . I 5 HOH A 23 423 71 HOH HOH . I 5 HOH A 24 424 18 HOH HOH . I 5 HOH A 25 425 109 HOH HOH . I 5 HOH A 26 426 32 HOH HOH . I 5 HOH A 27 427 35 HOH HOH . I 5 HOH A 28 428 15 HOH HOH . I 5 HOH A 29 429 78 HOH HOH . I 5 HOH A 30 430 68 HOH HOH . I 5 HOH A 31 431 50 HOH HOH . I 5 HOH A 32 432 85 HOH HOH . I 5 HOH A 33 433 49 HOH HOH . I 5 HOH A 34 434 46 HOH HOH . I 5 HOH A 35 435 65 HOH HOH . I 5 HOH A 36 436 37 HOH HOH . I 5 HOH A 37 437 8 HOH HOH . I 5 HOH A 38 438 42 HOH HOH . I 5 HOH A 39 439 17 HOH HOH . I 5 HOH A 40 440 2 HOH HOH . I 5 HOH A 41 441 92 HOH HOH . I 5 HOH A 42 442 63 HOH HOH . I 5 HOH A 43 443 93 HOH HOH . I 5 HOH A 44 444 3 HOH HOH . I 5 HOH A 45 445 11 HOH HOH . I 5 HOH A 46 446 83 HOH HOH . I 5 HOH A 47 447 38 HOH HOH . I 5 HOH A 48 448 101 HOH HOH . I 5 HOH A 49 449 88 HOH HOH . I 5 HOH A 50 450 39 HOH HOH . I 5 HOH A 51 451 73 HOH HOH . I 5 HOH A 52 452 129 HOH HOH . I 5 HOH A 53 453 54 HOH HOH . I 5 HOH A 54 454 130 HOH HOH . J 5 HOH B 1 401 102 HOH HOH . J 5 HOH B 2 402 99 HOH HOH . J 5 HOH B 3 403 77 HOH HOH . J 5 HOH B 4 404 86 HOH HOH . J 5 HOH B 5 405 70 HOH HOH . J 5 HOH B 6 406 23 HOH HOH . J 5 HOH B 7 407 81 HOH HOH . J 5 HOH B 8 408 31 HOH HOH . J 5 HOH B 9 409 120 HOH HOH . J 5 HOH B 10 410 123 HOH HOH . J 5 HOH B 11 411 89 HOH HOH . J 5 HOH B 12 412 60 HOH HOH . J 5 HOH B 13 413 122 HOH HOH . J 5 HOH B 14 414 10 HOH HOH . J 5 HOH B 15 415 119 HOH HOH . J 5 HOH B 16 416 62 HOH HOH . J 5 HOH B 17 417 59 HOH HOH . J 5 HOH B 18 418 26 HOH HOH . J 5 HOH B 19 419 21 HOH HOH . J 5 HOH B 20 420 72 HOH HOH . J 5 HOH B 21 421 52 HOH HOH . J 5 HOH B 22 422 7 HOH HOH . J 5 HOH B 23 423 87 HOH HOH . J 5 HOH B 24 424 75 HOH HOH . J 5 HOH B 25 425 12 HOH HOH . J 5 HOH B 26 426 106 HOH HOH . J 5 HOH B 27 427 90 HOH HOH . J 5 HOH B 28 428 25 HOH HOH . J 5 HOH B 29 429 19 HOH HOH . J 5 HOH B 30 430 67 HOH HOH . J 5 HOH B 31 431 33 HOH HOH . J 5 HOH B 32 432 22 HOH HOH . J 5 HOH B 33 433 96 HOH HOH . J 5 HOH B 34 434 132 HOH HOH . J 5 HOH B 35 435 91 HOH HOH . J 5 HOH B 36 436 48 HOH HOH . J 5 HOH B 37 437 114 HOH HOH . J 5 HOH B 38 438 9 HOH HOH . J 5 HOH B 39 439 41 HOH HOH . J 5 HOH B 40 440 121 HOH HOH . J 5 HOH B 41 441 100 HOH HOH . J 5 HOH B 42 442 84 HOH HOH . J 5 HOH B 43 443 64 HOH HOH . J 5 HOH B 44 444 27 HOH HOH . J 5 HOH B 45 445 74 HOH HOH . J 5 HOH B 46 446 14 HOH HOH . J 5 HOH B 47 447 124 HOH HOH . J 5 HOH B 48 448 69 HOH HOH . J 5 HOH B 49 449 58 HOH HOH . J 5 HOH B 50 450 82 HOH HOH . J 5 HOH B 51 451 4 HOH HOH . J 5 HOH B 52 452 30 HOH HOH . J 5 HOH B 53 453 51 HOH HOH . J 5 HOH B 54 454 80 HOH HOH . J 5 HOH B 55 455 95 HOH HOH . J 5 HOH B 56 456 43 HOH HOH . J 5 HOH B 57 457 105 HOH HOH . J 5 HOH B 58 458 111 HOH HOH . J 5 HOH B 59 459 107 HOH HOH . J 5 HOH B 60 460 28 HOH HOH . J 5 HOH B 61 461 117 HOH HOH . J 5 HOH B 62 462 127 HOH HOH . J 5 HOH B 63 463 36 HOH HOH . J 5 HOH B 64 464 98 HOH HOH . J 5 HOH B 65 465 110 HOH HOH . J 5 HOH B 66 466 112 HOH HOH . J 5 HOH B 67 467 131 HOH HOH . J 5 HOH B 68 468 116 HOH HOH . J 5 HOH B 69 469 118 HOH HOH . J 5 HOH B 70 470 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 57U . . . F 2 14.952 -17.83 32.154 1 34.12 ? C8 57U 301 B 1 HETATM 2 C C6 57U . . . F 2 12.74 -18.682 31.414 1 33.89 ? C6 57U 301 B 1 HETATM 3 C C5 57U . . . F 2 11.38 -18.928 30.763 1 34.43 ? C5 57U 301 B 1 HETATM 4 C C4 57U . . . F 2 11.062 -18.524 29.467 1 33.86 ? C4 57U 301 B 1 HETATM 5 C C3 57U . . . F 2 9.719 -18.878 29.315 1 36.67 ? C3 57U 301 B 1 HETATM 6 C C2 57U . . . F 2 9.262 -19.48 30.506 1 34.12 ? C2 57U 301 B 1 HETATM 7 N N1 57U . . . F 2 10.295 -19.509 31.397 1 36.23 ? N1 57U 301 B 1 HETATM 8 C C10 57U . . . F 2 13.333 -19.393 32.593 1 34.59 ? C10 57U 301 B 1 HETATM 9 C C14 57U . . . F 2 16.844 -16.526 31.413 1 36.19 ? C14 57U 301 B 1 HETATM 10 C C11 57U . . . F 2 12.725 -20.559 33.344 1 35.38 ? C11 57U 301 B 1 HETATM 11 O O18 57U . . . F 2 16.324 -16.34 30.319 1 33.34 ? O18 57U 301 B 1 HETATM 12 N N15 57U . . . F 2 18.078 -16.066 31.696 1 32.85 ? N15 57U 301 B 1 HETATM 13 C C16 57U . . . F 2 18.969 -15.253 30.875 1 35.72 ? C16 57U 301 B 1 HETATM 14 C C17 57U . . . F 2 20.352 -15.815 30.725 1 32.43 ? C17 57U 301 B 1 HETATM 15 N N13 57U . . . F 2 16.189 -17.251 32.357 1 37.73 ? N13 57U 301 B 1 HETATM 16 S S7 57U . . . F 2 13.806 -17.401 30.923 1 36.6 ? S7 57U 301 B 1 HETATM 17 N N9 57U . . . F 2 14.571 -18.876 32.92 1 36.47 ? N9 57U 301 B 1 HETATM 18 O O12 57U . . . F 2 11.459 -20.081 33.758 1 34.65 ? O12 57U 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #