data_5D71 # _model_server_result.job_id pnN2DwxZUf7zmJpcK6mcTg _model_server_result.datetime_utc '2025-07-14 15:44:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5D71 # _exptl.entry_id 5D71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D71 _cell.length_a 158.68 _cell.length_b 158.68 _cell.length_c 158.68 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 54 1_555 A SG CYS 113 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 105 A CYS 88 1_555 A SG CYS 138 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf4 B SG CYS 142 H CYS 140 1_555 B SG CYS 198 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf5 C SG CYS 22 L CYS 23 1_555 C SG CYS 85 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 C SG CYS 132 L CYS 134 1_555 C SG CYS 191 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 5D71 _atom_sites.fract_transf_matrix[1][1] 0.006302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG H 1 301 1 PEG PEG . E 5 SO4 L 1 301 2 SO4 SO4 . F 5 SO4 L 1 302 3 SO4 SO4 . G 6 HOH A 1 201 127 HOH HOH . G 6 HOH A 2 202 158 HOH HOH . G 6 HOH A 3 203 194 HOH HOH . G 6 HOH A 4 204 149 HOH HOH . G 6 HOH A 5 205 30 HOH HOH . G 6 HOH A 6 206 110 HOH HOH . G 6 HOH A 7 207 94 HOH HOH . G 6 HOH A 8 208 111 HOH HOH . G 6 HOH A 9 209 151 HOH HOH . G 6 HOH A 10 210 39 HOH HOH . G 6 HOH A 11 211 131 HOH HOH . G 6 HOH A 12 212 142 HOH HOH . G 6 HOH A 13 213 105 HOH HOH . G 6 HOH A 14 214 49 HOH HOH . G 6 HOH A 15 215 185 HOH HOH . G 6 HOH A 16 216 45 HOH HOH . G 6 HOH A 17 217 165 HOH HOH . G 6 HOH A 18 218 48 HOH HOH . G 6 HOH A 19 219 117 HOH HOH . G 6 HOH A 20 220 108 HOH HOH . G 6 HOH A 21 221 19 HOH HOH . G 6 HOH A 22 222 123 HOH HOH . G 6 HOH A 23 223 122 HOH HOH . G 6 HOH A 24 224 85 HOH HOH . G 6 HOH A 25 225 77 HOH HOH . G 6 HOH A 26 226 59 HOH HOH . G 6 HOH A 27 227 8 HOH HOH . G 6 HOH A 28 228 82 HOH HOH . G 6 HOH A 29 229 138 HOH HOH . G 6 HOH A 30 230 102 HOH HOH . G 6 HOH A 31 231 112 HOH HOH . G 6 HOH A 32 232 192 HOH HOH . G 6 HOH A 33 233 183 HOH HOH . G 6 HOH A 34 234 109 HOH HOH . G 6 HOH A 35 235 103 HOH HOH . G 6 HOH A 36 236 78 HOH HOH . G 6 HOH A 37 237 146 HOH HOH . G 6 HOH A 38 238 147 HOH HOH . G 6 HOH A 39 239 195 HOH HOH . H 6 HOH H 1 401 193 HOH HOH . H 6 HOH H 2 402 15 HOH HOH . H 6 HOH H 3 403 44 HOH HOH . H 6 HOH H 4 404 141 HOH HOH . H 6 HOH H 5 405 181 HOH HOH . H 6 HOH H 6 406 133 HOH HOH . H 6 HOH H 7 407 63 HOH HOH . H 6 HOH H 8 408 91 HOH HOH . H 6 HOH H 9 409 34 HOH HOH . H 6 HOH H 10 410 114 HOH HOH . H 6 HOH H 11 411 51 HOH HOH . H 6 HOH H 12 412 64 HOH HOH . H 6 HOH H 13 413 132 HOH HOH . H 6 HOH H 14 414 145 HOH HOH . H 6 HOH H 15 415 156 HOH HOH . H 6 HOH H 16 416 35 HOH HOH . H 6 HOH H 17 417 154 HOH HOH . H 6 HOH H 18 418 93 HOH HOH . H 6 HOH H 19 419 37 HOH HOH . H 6 HOH H 20 420 104 HOH HOH . H 6 HOH H 21 421 12 HOH HOH . H 6 HOH H 22 422 135 HOH HOH . H 6 HOH H 23 423 26 HOH HOH . H 6 HOH H 24 424 190 HOH HOH . H 6 HOH H 25 425 164 HOH HOH . H 6 HOH H 26 426 118 HOH HOH . H 6 HOH H 27 427 11 HOH HOH . H 6 HOH H 28 428 43 HOH HOH . H 6 HOH H 29 429 61 HOH HOH . H 6 HOH H 30 430 144 HOH HOH . H 6 HOH H 31 431 176 HOH HOH . H 6 HOH H 32 432 134 HOH HOH . H 6 HOH H 33 433 68 HOH HOH . H 6 HOH H 34 434 70 HOH HOH . H 6 HOH H 35 435 57 HOH HOH . H 6 HOH H 36 436 169 HOH HOH . H 6 HOH H 37 437 115 HOH HOH . H 6 HOH H 38 438 168 HOH HOH . H 6 HOH H 39 439 178 HOH HOH . H 6 HOH H 40 440 40 HOH HOH . H 6 HOH H 41 441 62 HOH HOH . H 6 HOH H 42 442 107 HOH HOH . H 6 HOH H 43 443 137 HOH HOH . H 6 HOH H 44 444 88 HOH HOH . H 6 HOH H 45 445 182 HOH HOH . H 6 HOH H 46 446 58 HOH HOH . H 6 HOH H 47 447 53 HOH HOH . H 6 HOH H 48 448 50 HOH HOH . H 6 HOH H 49 449 172 HOH HOH . H 6 HOH H 50 450 42 HOH HOH . H 6 HOH H 51 451 119 HOH HOH . H 6 HOH H 52 452 29 HOH HOH . H 6 HOH H 53 453 171 HOH HOH . H 6 HOH H 54 454 174 HOH HOH . H 6 HOH H 55 455 95 HOH HOH . H 6 HOH H 56 456 188 HOH HOH . H 6 HOH H 57 457 92 HOH HOH . H 6 HOH H 58 458 65 HOH HOH . H 6 HOH H 59 459 197 HOH HOH . I 6 HOH L 1 401 10 HOH HOH . I 6 HOH L 2 402 177 HOH HOH . I 6 HOH L 3 403 84 HOH HOH . I 6 HOH L 4 404 22 HOH HOH . I 6 HOH L 5 405 186 HOH HOH . I 6 HOH L 6 406 143 HOH HOH . I 6 HOH L 7 407 28 HOH HOH . I 6 HOH L 8 408 18 HOH HOH . I 6 HOH L 9 409 1 HOH HOH . I 6 HOH L 10 410 80 HOH HOH . I 6 HOH L 11 411 3 HOH HOH . I 6 HOH L 12 412 55 HOH HOH . I 6 HOH L 13 413 47 HOH HOH . I 6 HOH L 14 414 148 HOH HOH . I 6 HOH L 15 415 32 HOH HOH . I 6 HOH L 16 416 71 HOH HOH . I 6 HOH L 17 417 83 HOH HOH . I 6 HOH L 18 418 106 HOH HOH . I 6 HOH L 19 419 116 HOH HOH . I 6 HOH L 20 420 74 HOH HOH . I 6 HOH L 21 421 23 HOH HOH . I 6 HOH L 22 422 66 HOH HOH . I 6 HOH L 23 423 13 HOH HOH . I 6 HOH L 24 424 7 HOH HOH . I 6 HOH L 25 425 60 HOH HOH . I 6 HOH L 26 426 5 HOH HOH . I 6 HOH L 27 427 130 HOH HOH . I 6 HOH L 28 428 150 HOH HOH . I 6 HOH L 29 429 97 HOH HOH . I 6 HOH L 30 430 56 HOH HOH . I 6 HOH L 31 431 31 HOH HOH . I 6 HOH L 32 432 76 HOH HOH . I 6 HOH L 33 433 166 HOH HOH . I 6 HOH L 34 434 24 HOH HOH . I 6 HOH L 35 435 2 HOH HOH . I 6 HOH L 36 436 191 HOH HOH . I 6 HOH L 37 437 52 HOH HOH . I 6 HOH L 38 438 16 HOH HOH . I 6 HOH L 39 439 167 HOH HOH . I 6 HOH L 40 440 27 HOH HOH . I 6 HOH L 41 441 17 HOH HOH . I 6 HOH L 42 442 33 HOH HOH . I 6 HOH L 43 443 99 HOH HOH . I 6 HOH L 44 444 36 HOH HOH . I 6 HOH L 45 445 161 HOH HOH . I 6 HOH L 46 446 87 HOH HOH . I 6 HOH L 47 447 96 HOH HOH . I 6 HOH L 48 448 14 HOH HOH . I 6 HOH L 49 449 184 HOH HOH . I 6 HOH L 50 450 46 HOH HOH . I 6 HOH L 51 451 173 HOH HOH . I 6 HOH L 52 452 179 HOH HOH . I 6 HOH L 53 453 163 HOH HOH . I 6 HOH L 54 454 25 HOH HOH . I 6 HOH L 55 455 98 HOH HOH . I 6 HOH L 56 456 153 HOH HOH . I 6 HOH L 57 457 89 HOH HOH . I 6 HOH L 58 458 9 HOH HOH . I 6 HOH L 59 459 189 HOH HOH . I 6 HOH L 60 460 4 HOH HOH . I 6 HOH L 61 461 157 HOH HOH . I 6 HOH L 62 462 54 HOH HOH . I 6 HOH L 63 463 125 HOH HOH . I 6 HOH L 64 464 100 HOH HOH . I 6 HOH L 65 465 20 HOH HOH . I 6 HOH L 66 466 101 HOH HOH . I 6 HOH L 67 467 21 HOH HOH . I 6 HOH L 68 468 129 HOH HOH . I 6 HOH L 69 469 41 HOH HOH . I 6 HOH L 70 470 170 HOH HOH . I 6 HOH L 71 471 124 HOH HOH . I 6 HOH L 72 472 120 HOH HOH . I 6 HOH L 73 473 160 HOH HOH . I 6 HOH L 74 474 175 HOH HOH . I 6 HOH L 75 475 6 HOH HOH . I 6 HOH L 76 476 180 HOH HOH . I 6 HOH L 77 477 139 HOH HOH . I 6 HOH L 78 478 72 HOH HOH . I 6 HOH L 79 479 69 HOH HOH . I 6 HOH L 80 480 81 HOH HOH . I 6 HOH L 81 481 155 HOH HOH . I 6 HOH L 82 482 162 HOH HOH . I 6 HOH L 83 483 159 HOH HOH . I 6 HOH L 84 484 90 HOH HOH . I 6 HOH L 85 485 75 HOH HOH . I 6 HOH L 86 486 121 HOH HOH . I 6 HOH L 87 487 113 HOH HOH . I 6 HOH L 88 488 152 HOH HOH . I 6 HOH L 89 489 86 HOH HOH . I 6 HOH L 90 490 198 HOH HOH . I 6 HOH L 91 491 126 HOH HOH . I 6 HOH L 92 492 67 HOH HOH . I 6 HOH L 93 493 38 HOH HOH . I 6 HOH L 94 494 196 HOH HOH . I 6 HOH L 95 495 136 HOH HOH . I 6 HOH L 96 496 187 HOH HOH . I 6 HOH L 97 497 73 HOH HOH . I 6 HOH L 98 498 140 HOH HOH . I 6 HOH L 99 499 79 HOH HOH . I 6 HOH L 100 500 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 113.642 76.335 -21.823 1 84.14 ? C1 PEG 301 H 1 HETATM 2 O O1 PEG . . . D 4 112.807 76.686 -22.939 1 76.54 ? O1 PEG 301 H 1 HETATM 3 C C2 PEG . . . D 4 113.172 75.014 -21.215 1 82.95 ? C2 PEG 301 H 1 HETATM 4 O O2 PEG . . . D 4 114.166 74.436 -20.366 1 90.08 ? O2 PEG 301 H 1 HETATM 5 C C3 PEG . . . D 4 115.175 73.657 -21.023 1 93.24 ? C3 PEG 301 H 1 HETATM 6 C C4 PEG . . . D 4 114.849 72.163 -20.965 1 93.87 ? C4 PEG 301 H 1 HETATM 7 O O4 PEG . . . D 4 114.611 71.611 -22.274 1 93.51 ? O4 PEG 301 H 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #