data_5D72
#
_model_server_result.job_id            T20a9GRSfKtwqeijX71HOQ 
_model_server_result.datetime_utc      '2024-12-21 18:35:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5D72 
#
_exptl.entry_id    5D72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D72 
_cell.length_a            71.822 
_cell.length_b            97.853 
_cell.length_c            192.667 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,I,J,K 1 1 
B,E,F,H,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 54 1_555 A SG CYS 113 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 105 A CYS 88 1_555 A SG CYS 138 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 B SG CYS 71 B CYS 54 1_555 B SG CYS 113 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 105 B CYS 88 1_555 B SG CYS 138 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf6 C SG CYS 144 H CYS 140 1_555 C SG CYS 200 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 D SG CYS 22 L CYS 23 1_555 D SG CYS 85 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 D SG CYS 132 L CYS 134 1_555 D SG CYS 191 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf9 E SG CYS 22 M CYS 22 1_555 E SG CYS 98 M CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 E SG CYS 144 M CYS 140 1_555 E SG CYS 200 M CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf11 F SG CYS 22 N CYS 23 1_555 F SG CYS 85 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 F SG CYS 132 N CYS 134 1_555 F SG CYS 191 N CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     5D72 
_atom_sites.fract_transf_matrix[1][1]    0.013923 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 PEG H 1 301 1 PEG PEG . 
H 4 PEG N 1 301 2 PEG PEG . 
I 5 HOH A 1 201 21 HOH HOH . 
I 5 HOH A 2 202 18 HOH HOH . 
I 5 HOH A 3 203 22 HOH HOH . 
I 5 HOH A 4 204 16 HOH HOH . 
I 5 HOH A 5 205 1 HOH HOH . 
J 5 HOH H 1 401 12 HOH HOH . 
J 5 HOH H 2 402 15 HOH HOH . 
J 5 HOH H 3 403 23 HOH HOH . 
J 5 HOH H 4 404 20 HOH HOH . 
J 5 HOH H 5 405 24 HOH HOH . 
J 5 HOH H 6 406 13 HOH HOH . 
J 5 HOH H 7 407 4 HOH HOH . 
K 5 HOH L 1 301 11 HOH HOH . 
K 5 HOH L 2 302 19 HOH HOH . 
K 5 HOH L 3 303 26 HOH HOH . 
K 5 HOH L 4 304 10 HOH HOH . 
K 5 HOH L 5 305 17 HOH HOH . 
K 5 HOH L 6 306 9 HOH HOH . 
K 5 HOH L 7 307 27 HOH HOH . 
K 5 HOH L 8 308 25 HOH HOH . 
K 5 HOH L 9 309 3 HOH HOH . 
L 5 HOH M 1 301 28 HOH HOH . 
L 5 HOH M 2 302 6 HOH HOH . 
L 5 HOH M 3 303 2 HOH HOH . 
M 5 HOH N 1 401 32 HOH HOH . 
M 5 HOH N 2 402 31 HOH HOH . 
M 5 HOH N 3 403 14 HOH HOH . 
M 5 HOH N 4 404 8 HOH HOH . 
M 5 HOH N 5 405 30 HOH HOH . 
M 5 HOH N 6 406 29 HOH HOH . 
M 5 HOH N 7 407 5 HOH HOH . 
M 5 HOH N 8 408 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . H 4 6.075 -28.123 22.627 1 83.94 ? C1 PEG 301 N 1 
HETATM 2 O O1 PEG . . . H 4 5.487 -29.279 23.233 1 84.82 ? O1 PEG 301 N 1 
HETATM 3 C C2 PEG . . . H 4 7.51 -27.952 23.115 1 83.23 ? C2 PEG 301 N 1 
HETATM 4 O O2 PEG . . . H 4 8.363 -27.556 22.039 1 81.6 ? O2 PEG 301 N 1 
HETATM 5 C C3 PEG . . . H 4 9.726 -27.446 22.454 1 79.64 ? C3 PEG 301 N 1 
HETATM 6 C C4 PEG . . . H 4 10.589 -26.892 21.32 1 79.4 ? C4 PEG 301 N 1 
HETATM 7 O O4 PEG . . . H 4 11.614 -26.004 21.801 1 78.11 ? O4 PEG 301 N 1 
#
_model_server_stats.io_time_ms              90 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           7 
#