data_5D75 # _model_server_result.job_id TgjtiEbalAMBJO5k6rPfIQ _model_server_result.datetime_utc '2024-12-02 13:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5D75 # _exptl.entry_id 5D75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.822 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D75 _cell.length_a 74.784 _cell.length_b 74.784 _cell.length_c 44.618 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C30 H63 N O10' _chem_comp.formula_weight 597.822 _chem_comp.id JEF _chem_comp.mon_nstd_flag . _chem_comp.name "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JEFFAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O12 JEF sing 302 n n C38 H381 JEF sing 303 n n C38 H382 JEF sing 304 n n C38 H383 JEF sing 305 n n O12 C37 JEF sing 306 n n C37 C36 JEF sing 307 n n C37 H371 JEF sing 308 n n C37 H372 JEF sing 309 n n C36 O11 JEF sing 310 n n C36 H361 JEF sing 311 n n C36 H362 JEF sing 312 n n C33 C34 JEF sing 313 n n C33 C32 JEF sing 314 n n C33 H33 JEF sing 315 n n C34 H341 JEF sing 316 n n C34 H342 JEF sing 317 n n C34 H343 JEF sing 318 n n C32 O10 JEF sing 319 n n C32 H321 JEF sing 320 n n C32 H322 JEF sing 321 n n O10 C19 JEF sing 322 n n C19 C40 JEF sing 323 n n C19 C20 JEF sing 324 n n C19 H19 JEF sing 325 n n C40 H401 JEF sing 326 n n C40 H402 JEF sing 327 n n C40 H403 JEF sing 328 n n C20 O JEF sing 329 n n C20 H201 JEF sing 330 n n C20 H202 JEF sing 331 n n O C JEF sing 332 n n C C18 JEF sing 333 n n C C17 JEF sing 334 n n C H JEF sing 335 n n C18 H181 JEF sing 336 n n C18 H182 JEF sing 337 n n C18 H183 JEF sing 338 n n C17 OH JEF sing 339 n n C17 H171 JEF sing 340 n n C17 H172 JEF sing 341 n n OH C2 JEF sing 342 n n C2 C1 JEF sing 343 n n C2 C3 JEF sing 344 n n C2 H2 JEF sing 345 n n C1 H11A JEF sing 346 n n C1 H12 JEF sing 347 n n C1 H13A JEF sing 348 n n C3 O2 JEF sing 349 n n C3 H31 JEF sing 350 n n C3 H32 JEF sing 351 n n O2 C5 JEF sing 352 n n C5 C6 JEF sing 353 n n C5 C4 JEF sing 354 n n C5 H5 JEF sing 355 n n C6 H61 JEF sing 356 n n C6 H62 JEF sing 357 n n C6 H63 JEF sing 358 n n C4 O3 JEF sing 359 n n C4 H41 JEF sing 360 n n C4 H42 JEF sing 361 n n O3 C7 JEF sing 362 n n C7 C9 JEF sing 363 n n C7 C8 JEF sing 364 n n C7 H7 JEF sing 365 n n C9 H91 JEF sing 366 n n C9 H92 JEF sing 367 n n C9 H93 JEF sing 368 n n C8 O4 JEF sing 369 n n C8 H81 JEF sing 370 n n C8 H82 JEF sing 371 n n O4 C11 JEF sing 372 n n C11 C12 JEF sing 373 n n C11 C10 JEF sing 374 n n C11 H11 JEF sing 375 n n C12 H121 JEF sing 376 n n C12 H122 JEF sing 377 n n C12 H123 JEF sing 378 n n C10 O5 JEF sing 379 n n C10 H101 JEF sing 380 n n C10 H102 JEF sing 381 n n O5 C13 JEF sing 382 n n C13 C15 JEF sing 383 n n C13 C14 JEF sing 384 n n C13 H13 JEF sing 385 n n C15 H151 JEF sing 386 n n C15 H152 JEF sing 387 n n C15 H153 JEF sing 388 n n C14 O6 JEF sing 389 n n C14 H141 JEF sing 390 n n C14 H142 JEF sing 391 n n O6 C16 JEF sing 392 n n C16 C30 JEF sing 393 n n C16 H161 JEF sing 394 n n C16 H162 JEF sing 395 n n C30 C31 JEF sing 396 n n C30 N1 JEF sing 397 n n C30 H30 JEF sing 398 n n C31 H311 JEF sing 399 n n C31 H312 JEF sing 400 n n C31 H313 JEF sing 401 n n N1 HN11 JEF sing 402 n n N1 HN12 JEF sing 403 n n C33 O11 JEF sing 404 n n # _atom_sites.entry_id 5D75 _atom_sites.fract_transf_matrix[1][1] 0.013372 _atom_sites.fract_transf_matrix[1][2] 0.00772 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FK5 A 1 301 108 FK5 FK5 . C 3 JEF A 1 302 1 JEF 6JZ . D 3 JEF A 1 303 2 JEF 6JZ . E 4 HOH A 1 401 125 HOH HOH . E 4 HOH A 2 402 164 HOH HOH . E 4 HOH A 3 403 33 HOH HOH . E 4 HOH A 4 404 128 HOH HOH . E 4 HOH A 5 405 47 HOH HOH . E 4 HOH A 6 406 13 HOH HOH . E 4 HOH A 7 407 144 HOH HOH . E 4 HOH A 8 408 46 HOH HOH . E 4 HOH A 9 409 89 HOH HOH . E 4 HOH A 10 410 16 HOH HOH . E 4 HOH A 11 411 138 HOH HOH . E 4 HOH A 12 412 28 HOH HOH . E 4 HOH A 13 413 34 HOH HOH . E 4 HOH A 14 414 31 HOH HOH . E 4 HOH A 15 415 30 HOH HOH . E 4 HOH A 16 416 1 HOH HOH . E 4 HOH A 17 417 141 HOH HOH . E 4 HOH A 18 418 21 HOH HOH . E 4 HOH A 19 419 67 HOH HOH . E 4 HOH A 20 420 129 HOH HOH . E 4 HOH A 21 421 118 HOH HOH . E 4 HOH A 22 422 29 HOH HOH . E 4 HOH A 23 423 76 HOH HOH . E 4 HOH A 24 424 153 HOH HOH . E 4 HOH A 25 425 90 HOH HOH . E 4 HOH A 26 426 63 HOH HOH . E 4 HOH A 27 427 2 HOH HOH . E 4 HOH A 28 428 6 HOH HOH . E 4 HOH A 29 429 81 HOH HOH . E 4 HOH A 30 430 50 HOH HOH . E 4 HOH A 31 431 57 HOH HOH . E 4 HOH A 32 432 109 HOH HOH . E 4 HOH A 33 433 145 HOH HOH . E 4 HOH A 34 434 78 HOH HOH . E 4 HOH A 35 435 14 HOH HOH . E 4 HOH A 36 436 4 HOH HOH . E 4 HOH A 37 437 11 HOH HOH . E 4 HOH A 38 438 64 HOH HOH . E 4 HOH A 39 439 95 HOH HOH . E 4 HOH A 40 440 32 HOH HOH . E 4 HOH A 41 441 156 HOH HOH . E 4 HOH A 42 442 73 HOH HOH . E 4 HOH A 43 443 3 HOH HOH . E 4 HOH A 44 444 62 HOH HOH . E 4 HOH A 45 445 8 HOH HOH . E 4 HOH A 46 446 51 HOH HOH . E 4 HOH A 47 447 119 HOH HOH . E 4 HOH A 48 448 12 HOH HOH . E 4 HOH A 49 449 24 HOH HOH . E 4 HOH A 50 450 52 HOH HOH . E 4 HOH A 51 451 5 HOH HOH . E 4 HOH A 52 452 66 HOH HOH . E 4 HOH A 53 453 49 HOH HOH . E 4 HOH A 54 454 106 HOH HOH . E 4 HOH A 55 455 123 HOH HOH . E 4 HOH A 56 456 61 HOH HOH . E 4 HOH A 57 457 121 HOH HOH . E 4 HOH A 58 458 37 HOH HOH . E 4 HOH A 59 459 94 HOH HOH . E 4 HOH A 60 460 48 HOH HOH . E 4 HOH A 61 461 140 HOH HOH . E 4 HOH A 62 462 133 HOH HOH . E 4 HOH A 63 463 82 HOH HOH . E 4 HOH A 64 464 17 HOH HOH . E 4 HOH A 65 465 10 HOH HOH . E 4 HOH A 66 466 101 HOH HOH . E 4 HOH A 67 467 15 HOH HOH . E 4 HOH A 68 468 165 HOH HOH . E 4 HOH A 69 469 26 HOH HOH . E 4 HOH A 70 470 160 HOH HOH . E 4 HOH A 71 471 53 HOH HOH . E 4 HOH A 72 472 91 HOH HOH . E 4 HOH A 73 473 115 HOH HOH . E 4 HOH A 74 474 107 HOH HOH . E 4 HOH A 75 475 162 HOH HOH . E 4 HOH A 76 476 27 HOH HOH . E 4 HOH A 77 477 38 HOH HOH . E 4 HOH A 78 478 110 HOH HOH . E 4 HOH A 79 479 60 HOH HOH . E 4 HOH A 80 480 158 HOH HOH . E 4 HOH A 81 481 139 HOH HOH . E 4 HOH A 82 482 35 HOH HOH . E 4 HOH A 83 483 130 HOH HOH . E 4 HOH A 84 484 112 HOH HOH . E 4 HOH A 85 485 58 HOH HOH . E 4 HOH A 86 486 126 HOH HOH . E 4 HOH A 87 487 143 HOH HOH . E 4 HOH A 88 488 163 HOH HOH . E 4 HOH A 89 489 116 HOH HOH . E 4 HOH A 90 490 159 HOH HOH . E 4 HOH A 91 491 136 HOH HOH . E 4 HOH A 92 492 87 HOH HOH . E 4 HOH A 93 493 135 HOH HOH . E 4 HOH A 94 494 148 HOH HOH . E 4 HOH A 95 495 142 HOH HOH . E 4 HOH A 96 496 166 HOH HOH . E 4 HOH A 97 497 146 HOH HOH . E 4 HOH A 98 498 120 HOH HOH . E 4 HOH A 99 499 105 HOH HOH . E 4 HOH A 100 500 42 HOH HOH . E 4 HOH A 101 501 114 HOH HOH . E 4 HOH A 102 502 157 HOH HOH . E 4 HOH A 103 503 124 HOH HOH . E 4 HOH A 104 504 98 HOH HOH . E 4 HOH A 105 505 152 HOH HOH . E 4 HOH A 106 506 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C37 JEF . . . C 3 15.968 -31.043 -9.809 1 50.76 ? C37 JEF 302 A 1 HETATM 2 C C36 JEF . . . C 3 15.644 -31.52 -11.211 1 52.44 ? C36 JEF 302 A 1 HETATM 3 O O11 JEF . . . C 3 14.497 -30.816 -11.699 1 52.96 ? O11 JEF 302 A 1 HETATM 4 C C33 JEF . . . C 3 13.521 -31.675 -12.308 1 52.2 ? C33 JEF 302 A 1 HETATM 5 C C32 JEF . . . C 3 12.112 -31.074 -12.264 1 49.34 ? C32 JEF 302 A 1 HETATM 6 O O10 JEF . . . C 3 12.186 -29.645 -12.262 1 48.86 ? O10 JEF 302 A 1 HETATM 7 C C19 JEF . . . C 3 11.176 -28.995 -11.489 1 48.65 ? C19 JEF 302 A 1 HETATM 8 C C20 JEF . . . C 3 11.569 -27.536 -11.256 1 48.48 ? C20 JEF 302 A 1 HETATM 9 O O JEF . . . C 3 11.344 -27.159 -9.898 1 48.64 ? O JEF 302 A 1 HETATM 10 C C JEF . . . C 3 12.514 -26.664 -9.245 1 47.64 ? C JEF 302 A 1 HETATM 11 C C17 JEF . . . C 3 12.298 -26.573 -7.737 1 47.3 ? C17 JEF 302 A 1 HETATM 12 O OH JEF . . . C 3 13.526 -26.843 -7.069 1 48.85 ? OH JEF 302 A 1 HETATM 13 C C2 JEF . . . C 3 13.384 -27.61 -5.876 1 48.61 ? C2 JEF 302 A 1 HETATM 14 C C3 JEF . . . C 3 14.701 -28.297 -5.523 1 49.19 ? C3 JEF 302 A 1 HETATM 15 O O2 JEF . . . C 3 14.981 -29.376 -6.428 1 52.94 ? O2 JEF 302 A 1 HETATM 16 C C5 JEF . . . C 3 14.884 -30.669 -5.819 1 50.91 ? C5 JEF 302 A 1 HETATM 17 C C4 JEF . . . C 3 16.19 -31.428 -5.922 1 50.57 ? C4 JEF 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 17 #