data_5D7B # _model_server_result.job_id GsWoBiMBhwcijpJAiQu5Ig _model_server_result.datetime_utc '2025-04-18 13:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5D7B # _exptl.entry_id 5D7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D7B _cell.length_a 143.393 _cell.length_b 143.393 _cell.length_c 197.783 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5D7B _atom_sites.fract_transf_matrix[1][1] 0.006974 _atom_sites.fract_transf_matrix[1][2] 0.004026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 2 GOL A 1 402 3 GOL GOL . E 2 GOL A 1 403 4 GOL GOL . F 2 GOL A 1 404 9 GOL GOL . G 2 GOL A 1 405 15 GOL GOL . H 2 GOL A 1 406 19 GOL GOL . I 2 GOL B 1 401 2 GOL GOL . J 2 GOL B 1 402 5 GOL GOL . K 2 GOL B 1 403 6 GOL GOL . L 2 GOL B 1 404 8 GOL GOL . M 2 GOL B 1 405 10 GOL GOL . N 2 GOL B 1 406 12 GOL GOL . O 2 GOL B 1 407 14 GOL GOL . P 2 GOL B 1 408 16 GOL GOL . Q 2 GOL B 1 409 17 GOL GOL . R 3 HOH A 1 501 3 HOH HOH . R 3 HOH A 2 502 14 HOH HOH . R 3 HOH A 3 503 13 HOH HOH . R 3 HOH A 4 504 15 HOH HOH . R 3 HOH A 5 505 2 HOH HOH . R 3 HOH A 6 506 20 HOH HOH . R 3 HOH A 7 507 12 HOH HOH . R 3 HOH A 8 508 7 HOH HOH . R 3 HOH A 9 509 17 HOH HOH . R 3 HOH A 10 510 16 HOH HOH . R 3 HOH A 11 511 8 HOH HOH . S 3 HOH B 1 501 4 HOH HOH . S 3 HOH B 2 502 1 HOH HOH . S 3 HOH B 3 503 19 HOH HOH . S 3 HOH B 4 504 11 HOH HOH . S 3 HOH B 5 505 6 HOH HOH . S 3 HOH B 6 506 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 77.092 -22.078 34.611 1 91.42 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . F 2 78.298 -22.508 35.205 1 67.48 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . F 2 76.025 -21.876 35.683 1 101.23 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . F 2 76.62 -21.886 36.961 1 112.1 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . F 2 74.98 -22.984 35.596 1 100.83 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . F 2 74.203 -22.815 34.432 1 86.75 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #