data_5D7E # _model_server_result.job_id wO81O8K5IYtYn4jYkWwkkQ _model_server_result.datetime_utc '2024-10-28 02:38:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 5D7E # _exptl.entry_id 5D7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D7E _cell.length_a 113.164 _cell.length_b 113.164 _cell.length_c 26.524 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 5 C ARG 7 1_555 B N ALY 6 C ALY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C ALY 6 C ALY 8 1_555 B N SER 7 C SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 233 n n O1 C6 MES sing 234 n n C2 C3 MES sing 235 n n C2 H21 MES sing 236 n n C2 H22 MES sing 237 n n C3 N4 MES sing 238 n n C3 H31 MES sing 239 n n C3 H32 MES sing 240 n n N4 C5 MES sing 241 n n N4 C7 MES sing 242 n n N4 HN4 MES sing 243 n n C5 C6 MES sing 244 n n C5 H51 MES sing 245 n n C5 H52 MES sing 246 n n C6 H61 MES sing 247 n n C6 H62 MES sing 248 n n C7 C8 MES sing 249 n n C7 H71 MES sing 250 n n C7 H72 MES sing 251 n n C8 S MES sing 252 n n C8 H81 MES sing 253 n n C8 H82 MES sing 254 n n S O1S MES doub 255 n n S O2S MES doub 256 n n S O3S MES sing 257 n n # _atom_sites.entry_id 5D7E _atom_sites.fract_transf_matrix[1][1] 0.008837 _atom_sites.fract_transf_matrix[1][2] 0.005102 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.037702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PEG A 1 201 1 PEG PEG . D 3 PEG A 1 202 2 PEG PEG . E 3 PEG A 1 203 3 PEG PEG . F 4 MES A 1 204 1 MES MES . G 5 HOH A 1 301 5 HOH HOH . G 5 HOH A 2 302 40 HOH HOH . G 5 HOH A 3 303 29 HOH HOH . G 5 HOH A 4 304 58 HOH HOH . G 5 HOH A 5 305 38 HOH HOH . G 5 HOH A 6 306 16 HOH HOH . G 5 HOH A 7 307 67 HOH HOH . G 5 HOH A 8 308 62 HOH HOH . G 5 HOH A 9 309 27 HOH HOH . G 5 HOH A 10 310 18 HOH HOH . G 5 HOH A 11 311 9 HOH HOH . G 5 HOH A 12 312 13 HOH HOH . G 5 HOH A 13 313 45 HOH HOH . G 5 HOH A 14 314 51 HOH HOH . G 5 HOH A 15 315 20 HOH HOH . G 5 HOH A 16 316 6 HOH HOH . G 5 HOH A 17 317 37 HOH HOH . G 5 HOH A 18 318 14 HOH HOH . G 5 HOH A 19 319 3 HOH HOH . G 5 HOH A 20 320 4 HOH HOH . G 5 HOH A 21 321 41 HOH HOH . G 5 HOH A 22 322 56 HOH HOH . G 5 HOH A 23 323 1 HOH HOH . G 5 HOH A 24 324 26 HOH HOH . G 5 HOH A 25 325 52 HOH HOH . G 5 HOH A 26 326 28 HOH HOH . G 5 HOH A 27 327 48 HOH HOH . G 5 HOH A 28 328 7 HOH HOH . G 5 HOH A 29 329 22 HOH HOH . G 5 HOH A 30 330 64 HOH HOH . G 5 HOH A 31 331 31 HOH HOH . G 5 HOH A 32 332 24 HOH HOH . G 5 HOH A 33 333 21 HOH HOH . G 5 HOH A 34 334 11 HOH HOH . G 5 HOH A 35 335 49 HOH HOH . G 5 HOH A 36 336 33 HOH HOH . G 5 HOH A 37 337 44 HOH HOH . G 5 HOH A 38 338 63 HOH HOH . G 5 HOH A 39 339 2 HOH HOH . G 5 HOH A 40 340 50 HOH HOH . G 5 HOH A 41 341 23 HOH HOH . G 5 HOH A 42 342 25 HOH HOH . G 5 HOH A 43 343 36 HOH HOH . G 5 HOH A 44 344 54 HOH HOH . G 5 HOH A 45 345 8 HOH HOH . G 5 HOH A 46 346 30 HOH HOH . G 5 HOH A 47 347 35 HOH HOH . G 5 HOH A 48 348 42 HOH HOH . G 5 HOH A 49 349 60 HOH HOH . G 5 HOH A 50 350 43 HOH HOH . G 5 HOH A 51 351 17 HOH HOH . G 5 HOH A 52 352 47 HOH HOH . G 5 HOH A 53 353 34 HOH HOH . G 5 HOH A 54 354 53 HOH HOH . G 5 HOH A 55 355 39 HOH HOH . G 5 HOH A 56 356 61 HOH HOH . G 5 HOH A 57 357 19 HOH HOH . G 5 HOH A 58 358 46 HOH HOH . G 5 HOH A 59 359 55 HOH HOH . G 5 HOH A 60 360 59 HOH HOH . G 5 HOH A 61 361 65 HOH HOH . H 5 HOH C 1 101 15 HOH HOH . H 5 HOH C 2 102 10 HOH HOH . H 5 HOH C 3 103 12 HOH HOH . H 5 HOH C 4 104 66 HOH HOH . H 5 HOH C 5 105 32 HOH HOH . H 5 HOH C 6 106 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . F 4 46.299 33.758 -0.45 1 69.37 ? O1 MES 204 A 1 HETATM 2 C C2 MES . . . F 4 46.533 34.932 0.292 1 70.56 ? C2 MES 204 A 1 HETATM 3 C C3 MES . . . F 4 46.651 36.141 -0.651 1 72.07 ? C3 MES 204 A 1 HETATM 4 N N4 MES . . . F 4 47.719 35.946 -1.535 1 73.81 ? N4 MES 204 A 1 HETATM 5 C C5 MES . . . F 4 47.509 34.736 -2.285 1 73.69 ? C5 MES 204 A 1 HETATM 6 C C6 MES . . . F 4 47.406 33.553 -1.328 1 70.99 ? C6 MES 204 A 1 HETATM 7 C C7 MES . . . F 4 47.783 37.073 -2.439 1 73.39 ? C7 MES 204 A 1 HETATM 8 C C8 MES . . . F 4 49.232 37.303 -2.943 1 83.48 ? C8 MES 204 A 1 HETATM 9 S S MES . . . F 4 49.17 38.433 -4.315 1 144.75 ? S MES 204 A 1 HETATM 10 O O1S MES . . . F 4 48.477 37.797 -5.514 1 143.38 ? O1S MES 204 A 1 HETATM 11 O O2S MES . . . F 4 50.55 38.715 -4.887 1 147.37 ? O2S MES 204 A 1 HETATM 12 O O3S MES . . . F 4 48.483 39.711 -3.907 1 145.34 ? O3S MES 204 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #