data_5D7F # _model_server_result.job_id C30V7w19lq2bTyKCusXf1A _model_server_result.datetime_utc '2024-10-18 17:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5D7F # _exptl.entry_id 5D7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.65 _cell.angle_gamma 90 _cell.entry_id 5D7F _cell.length_a 35.089 _cell.length_b 59.824 _cell.length_c 47.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 19 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A O GLU 22 A GLU 22 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A O ASP 24 A ASP 24 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A O LYS 27 A LYS 27 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 A OE1 GLU 32 A GLU 32 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 A OE2 GLU 32 A GLU 32 1_555 D CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc7 A OD1 ASP 62 A ASP 62 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A OD1 ASP 64 A ASP 64 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 A OD1 ASP 66 A ASP 66 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A O GLU 68 A GLU 68 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 A OE1 GLU 73 A GLU 73 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc12 A OE2 GLU 73 A GLU 73 1_555 E CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc13 D CA CA . A CA 801 1_555 N O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc14 E CA CA . A CA 802 1_555 N O HOH . A HOH 948 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 B O SER 19 B SER 19 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 B O GLU 22 B GLU 22 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc17 B O ASP 24 B ASP 24 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc18 B O LYS 27 B LYS 27 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc19 B OE1 GLU 32 B GLU 32 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc20 B OE2 GLU 32 B GLU 32 1_555 K CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc21 B OD1 ASP 62 B ASP 62 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc22 B OD1 ASP 64 B ASP 64 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc23 B OD1 ASP 66 B ASP 66 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc24 B O GLU 68 B GLU 68 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc25 B OE1 GLU 73 B GLU 73 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc26 B OE2 GLU 73 B GLU 73 1_555 L CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc27 K CA CA . B CA 801 1_555 O O HOH . B HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc28 L CA CA . B CA 802 1_555 O O HOH . B HOH 948 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5D7F _atom_sites.fract_transf_matrix[1][1] 0.028499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011311 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 801 801 CA CA . E 3 CA A 1 802 802 CA CA . F 4 GOL A 1 803 1 GOL GOL . G 4 GOL A 1 804 2 GOL GOL . H 4 GOL A 1 805 4 GOL GOL . I 4 GOL A 1 806 5 GOL GOL . J 4 GOL A 1 807 6 GOL GOL . K 3 CA B 1 801 801 CA CA . L 3 CA B 1 802 802 CA CA . M 4 GOL B 1 803 3 GOL GOL . N 5 HOH A 1 901 59 HOH HOH . N 5 HOH A 2 902 196 HOH HOH . N 5 HOH A 3 903 157 HOH HOH . N 5 HOH A 4 904 98 HOH HOH . N 5 HOH A 5 905 116 HOH HOH . N 5 HOH A 6 906 137 HOH HOH . N 5 HOH A 7 907 129 HOH HOH . N 5 HOH A 8 908 72 HOH HOH . N 5 HOH A 9 909 101 HOH HOH . N 5 HOH A 10 910 109 HOH HOH . N 5 HOH A 11 911 118 HOH HOH . N 5 HOH A 12 912 3 HOH HOH . N 5 HOH A 13 913 106 HOH HOH . N 5 HOH A 14 914 73 HOH HOH . N 5 HOH A 15 915 111 HOH HOH . N 5 HOH A 16 916 29 HOH HOH . N 5 HOH A 17 917 45 HOH HOH . N 5 HOH A 18 918 134 HOH HOH . N 5 HOH A 19 919 19 HOH HOH . N 5 HOH A 20 920 214 HOH HOH . N 5 HOH A 21 921 130 HOH HOH . N 5 HOH A 22 922 184 HOH HOH . N 5 HOH A 23 923 100 HOH HOH . N 5 HOH A 24 924 150 HOH HOH . N 5 HOH A 25 925 9 HOH HOH . N 5 HOH A 26 926 57 HOH HOH . N 5 HOH A 27 927 24 HOH HOH . N 5 HOH A 28 928 44 HOH HOH . N 5 HOH A 29 929 148 HOH HOH . N 5 HOH A 30 930 52 HOH HOH . N 5 HOH A 31 931 16 HOH HOH . N 5 HOH A 32 932 78 HOH HOH . N 5 HOH A 33 933 35 HOH HOH . N 5 HOH A 34 934 84 HOH HOH . N 5 HOH A 35 935 86 HOH HOH . N 5 HOH A 36 936 58 HOH HOH . N 5 HOH A 37 937 80 HOH HOH . N 5 HOH A 38 938 8 HOH HOH . N 5 HOH A 39 939 133 HOH HOH . N 5 HOH A 40 940 122 HOH HOH . N 5 HOH A 41 941 22 HOH HOH . N 5 HOH A 42 942 147 HOH HOH . N 5 HOH A 43 943 13 HOH HOH . N 5 HOH A 44 944 68 HOH HOH . N 5 HOH A 45 945 123 HOH HOH . N 5 HOH A 46 946 23 HOH HOH . N 5 HOH A 47 947 104 HOH HOH . N 5 HOH A 48 948 4 HOH HOH . N 5 HOH A 49 949 11 HOH HOH . N 5 HOH A 50 950 168 HOH HOH . N 5 HOH A 51 951 28 HOH HOH . N 5 HOH A 52 952 85 HOH HOH . N 5 HOH A 53 953 189 HOH HOH . N 5 HOH A 54 954 40 HOH HOH . N 5 HOH A 55 955 117 HOH HOH . N 5 HOH A 56 956 25 HOH HOH . N 5 HOH A 57 957 99 HOH HOH . N 5 HOH A 58 958 18 HOH HOH . N 5 HOH A 59 959 46 HOH HOH . N 5 HOH A 60 960 64 HOH HOH . N 5 HOH A 61 961 146 HOH HOH . N 5 HOH A 62 962 87 HOH HOH . N 5 HOH A 63 963 70 HOH HOH . N 5 HOH A 64 964 43 HOH HOH . N 5 HOH A 65 965 26 HOH HOH . N 5 HOH A 66 966 119 HOH HOH . N 5 HOH A 67 967 38 HOH HOH . N 5 HOH A 68 968 48 HOH HOH . N 5 HOH A 69 969 36 HOH HOH . N 5 HOH A 70 970 151 HOH HOH . N 5 HOH A 71 971 200 HOH HOH . N 5 HOH A 72 972 83 HOH HOH . N 5 HOH A 73 973 81 HOH HOH . N 5 HOH A 74 974 204 HOH HOH . N 5 HOH A 75 975 55 HOH HOH . N 5 HOH A 76 976 164 HOH HOH . N 5 HOH A 77 977 183 HOH HOH . N 5 HOH A 78 978 42 HOH HOH . N 5 HOH A 79 979 95 HOH HOH . N 5 HOH A 80 980 202 HOH HOH . N 5 HOH A 81 981 139 HOH HOH . N 5 HOH A 82 982 175 HOH HOH . N 5 HOH A 83 983 96 HOH HOH . N 5 HOH A 84 984 97 HOH HOH . N 5 HOH A 85 985 158 HOH HOH . N 5 HOH A 86 986 190 HOH HOH . N 5 HOH A 87 987 206 HOH HOH . N 5 HOH A 88 988 121 HOH HOH . N 5 HOH A 89 989 156 HOH HOH . N 5 HOH A 90 990 127 HOH HOH . N 5 HOH A 91 991 182 HOH HOH . N 5 HOH A 92 992 108 HOH HOH . N 5 HOH A 93 993 212 HOH HOH . N 5 HOH A 94 994 155 HOH HOH . N 5 HOH A 95 995 94 HOH HOH . N 5 HOH A 96 996 77 HOH HOH . N 5 HOH A 97 997 56 HOH HOH . N 5 HOH A 98 998 186 HOH HOH . N 5 HOH A 99 999 203 HOH HOH . N 5 HOH A 100 1000 177 HOH HOH . N 5 HOH A 101 1001 176 HOH HOH . N 5 HOH A 102 1002 178 HOH HOH . O 5 HOH B 1 901 160 HOH HOH . O 5 HOH B 2 902 153 HOH HOH . O 5 HOH B 3 903 138 HOH HOH . O 5 HOH B 4 904 162 HOH HOH . O 5 HOH B 5 905 173 HOH HOH . O 5 HOH B 6 906 174 HOH HOH . O 5 HOH B 7 907 205 HOH HOH . O 5 HOH B 8 908 131 HOH HOH . O 5 HOH B 9 909 76 HOH HOH . O 5 HOH B 10 910 179 HOH HOH . O 5 HOH B 11 911 54 HOH HOH . O 5 HOH B 12 912 143 HOH HOH . O 5 HOH B 13 913 1 HOH HOH . O 5 HOH B 14 914 60 HOH HOH . O 5 HOH B 15 915 21 HOH HOH . O 5 HOH B 16 916 170 HOH HOH . O 5 HOH B 17 917 15 HOH HOH . O 5 HOH B 18 918 30 HOH HOH . O 5 HOH B 19 919 209 HOH HOH . O 5 HOH B 20 920 82 HOH HOH . O 5 HOH B 21 921 152 HOH HOH . O 5 HOH B 22 922 159 HOH HOH . O 5 HOH B 23 923 201 HOH HOH . O 5 HOH B 24 924 136 HOH HOH . O 5 HOH B 25 925 37 HOH HOH . O 5 HOH B 26 926 89 HOH HOH . O 5 HOH B 27 927 107 HOH HOH . O 5 HOH B 28 928 10 HOH HOH . O 5 HOH B 29 929 167 HOH HOH . O 5 HOH B 30 930 120 HOH HOH . O 5 HOH B 31 931 34 HOH HOH . O 5 HOH B 32 932 17 HOH HOH . O 5 HOH B 33 933 5 HOH HOH . O 5 HOH B 34 934 195 HOH HOH . O 5 HOH B 35 935 7 HOH HOH . O 5 HOH B 36 936 50 HOH HOH . O 5 HOH B 37 937 49 HOH HOH . O 5 HOH B 38 938 145 HOH HOH . O 5 HOH B 39 939 20 HOH HOH . O 5 HOH B 40 940 62 HOH HOH . O 5 HOH B 41 941 124 HOH HOH . O 5 HOH B 42 942 12 HOH HOH . O 5 HOH B 43 943 112 HOH HOH . O 5 HOH B 44 944 66 HOH HOH . O 5 HOH B 45 945 14 HOH HOH . O 5 HOH B 46 946 144 HOH HOH . O 5 HOH B 47 947 63 HOH HOH . O 5 HOH B 48 948 2 HOH HOH . O 5 HOH B 49 949 126 HOH HOH . O 5 HOH B 50 950 91 HOH HOH . O 5 HOH B 51 951 110 HOH HOH . O 5 HOH B 52 952 69 HOH HOH . O 5 HOH B 53 953 105 HOH HOH . O 5 HOH B 54 954 33 HOH HOH . O 5 HOH B 55 955 211 HOH HOH . O 5 HOH B 56 956 41 HOH HOH . O 5 HOH B 57 957 75 HOH HOH . O 5 HOH B 58 958 32 HOH HOH . O 5 HOH B 59 959 140 HOH HOH . O 5 HOH B 60 960 6 HOH HOH . O 5 HOH B 61 961 47 HOH HOH . O 5 HOH B 62 962 114 HOH HOH . O 5 HOH B 63 963 53 HOH HOH . O 5 HOH B 64 964 163 HOH HOH . O 5 HOH B 65 965 65 HOH HOH . O 5 HOH B 66 966 71 HOH HOH . O 5 HOH B 67 967 141 HOH HOH . O 5 HOH B 68 968 172 HOH HOH . O 5 HOH B 69 969 27 HOH HOH . O 5 HOH B 70 970 79 HOH HOH . O 5 HOH B 71 971 169 HOH HOH . O 5 HOH B 72 972 67 HOH HOH . O 5 HOH B 73 973 39 HOH HOH . O 5 HOH B 74 974 102 HOH HOH . O 5 HOH B 75 975 31 HOH HOH . O 5 HOH B 76 976 74 HOH HOH . O 5 HOH B 77 977 125 HOH HOH . O 5 HOH B 78 978 142 HOH HOH . O 5 HOH B 79 979 132 HOH HOH . O 5 HOH B 80 980 103 HOH HOH . O 5 HOH B 81 981 115 HOH HOH . O 5 HOH B 82 982 51 HOH HOH . O 5 HOH B 83 983 188 HOH HOH . O 5 HOH B 84 984 135 HOH HOH . O 5 HOH B 85 985 88 HOH HOH . O 5 HOH B 86 986 154 HOH HOH . O 5 HOH B 87 987 149 HOH HOH . O 5 HOH B 88 988 194 HOH HOH . O 5 HOH B 89 989 181 HOH HOH . O 5 HOH B 90 990 165 HOH HOH . O 5 HOH B 91 991 187 HOH HOH . O 5 HOH B 92 992 93 HOH HOH . O 5 HOH B 93 993 191 HOH HOH . O 5 HOH B 94 994 128 HOH HOH . O 5 HOH B 95 995 185 HOH HOH . O 5 HOH B 96 996 213 HOH HOH . O 5 HOH B 97 997 90 HOH HOH . O 5 HOH B 98 998 61 HOH HOH . O 5 HOH B 99 999 210 HOH HOH . O 5 HOH B 100 1000 161 HOH HOH . O 5 HOH B 101 1001 197 HOH HOH . O 5 HOH B 102 1002 199 HOH HOH . P 5 HOH P 1 101 193 HOH HOH . P 5 HOH P 2 102 113 HOH HOH . P 5 HOH P 3 103 180 HOH HOH . P 5 HOH P 4 104 166 HOH HOH . P 5 HOH P 5 105 207 HOH HOH . P 5 HOH P 6 106 208 HOH HOH . P 5 HOH P 7 107 92 HOH HOH . P 5 HOH P 8 108 171 HOH HOH . P 5 HOH P 9 109 192 HOH HOH . P 5 HOH P 10 110 198 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.551 _atom_site.Cartn_y -21.85 _atom_site.Cartn_z 27.604 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #