data_5D7O # _model_server_result.job_id tTBn5kvSdSLFl35s8jWDnQ _model_server_result.datetime_utc '2024-10-18 10:25:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 5D7O # _exptl.entry_id 5D7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D7O _cell.length_a 78 _cell.length_b 78.17 _cell.length_c 114.241 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 149 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 154 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A SG CYS 175 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A SG CYS 178 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 B SG CYS 149 B CYS 195 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 B SG CYS 154 B CYS 200 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 B SG CYS 175 B CYS 221 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc8 B SG CYS 178 B CYS 224 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 299 n n C1 C2 PGE sing 300 n n C1 H1 PGE sing 301 n n C1 H12 PGE sing 302 n n O1 HO1 PGE sing 303 n n C2 O2 PGE sing 304 n n C2 H2 PGE sing 305 n n C2 H22 PGE sing 306 n n O2 C3 PGE sing 307 n n C3 C4 PGE sing 308 n n C3 H3 PGE sing 309 n n C3 H32 PGE sing 310 n n C4 O3 PGE sing 311 n n C4 H4 PGE sing 312 n n C4 H42 PGE sing 313 n n O4 C6 PGE sing 314 n n O4 HO4 PGE sing 315 n n C6 C5 PGE sing 316 n n C6 H6 PGE sing 317 n n C6 H62 PGE sing 318 n n C5 O3 PGE sing 319 n n C5 H5 PGE sing 320 n n C5 H52 PGE sing 321 n n # _atom_sites.entry_id 5D7O _atom_sites.fract_transf_matrix[1][1] 0.012821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 400 ZN ZN . D 3 AR6 A 1 402 2 AR6 AR6 . E 2 ZN B 1 401 400 ZN ZN . F 3 AR6 B 1 402 1 AR6 AR6 . G 4 PGE B 1 403 3 PGE PGE . H 5 HOH A 1 501 95 HOH HOH . H 5 HOH A 2 502 83 HOH HOH . H 5 HOH A 3 503 11 HOH HOH . H 5 HOH A 4 504 18 HOH HOH . H 5 HOH A 5 505 97 HOH HOH . H 5 HOH A 6 506 115 HOH HOH . H 5 HOH A 7 507 131 HOH HOH . H 5 HOH A 8 508 91 HOH HOH . H 5 HOH A 9 509 106 HOH HOH . H 5 HOH A 10 510 70 HOH HOH . H 5 HOH A 11 511 197 HOH HOH . H 5 HOH A 12 512 12 HOH HOH . H 5 HOH A 13 513 102 HOH HOH . H 5 HOH A 14 514 1 HOH HOH . H 5 HOH A 15 515 105 HOH HOH . H 5 HOH A 16 516 2 HOH HOH . H 5 HOH A 17 517 79 HOH HOH . H 5 HOH A 18 518 184 HOH HOH . H 5 HOH A 19 519 149 HOH HOH . H 5 HOH A 20 520 36 HOH HOH . H 5 HOH A 21 521 177 HOH HOH . H 5 HOH A 22 522 200 HOH HOH . H 5 HOH A 23 523 64 HOH HOH . H 5 HOH A 24 524 17 HOH HOH . H 5 HOH A 25 525 209 HOH HOH . H 5 HOH A 26 526 171 HOH HOH . H 5 HOH A 27 527 137 HOH HOH . H 5 HOH A 28 528 107 HOH HOH . H 5 HOH A 29 529 55 HOH HOH . H 5 HOH A 30 530 59 HOH HOH . H 5 HOH A 31 531 183 HOH HOH . H 5 HOH A 32 532 81 HOH HOH . H 5 HOH A 33 533 103 HOH HOH . H 5 HOH A 34 534 148 HOH HOH . H 5 HOH A 35 535 89 HOH HOH . H 5 HOH A 36 536 189 HOH HOH . H 5 HOH A 37 537 53 HOH HOH . H 5 HOH A 38 538 94 HOH HOH . H 5 HOH A 39 539 13 HOH HOH . H 5 HOH A 40 540 52 HOH HOH . H 5 HOH A 41 541 73 HOH HOH . H 5 HOH A 42 542 198 HOH HOH . H 5 HOH A 43 543 96 HOH HOH . H 5 HOH A 44 544 40 HOH HOH . H 5 HOH A 45 545 29 HOH HOH . H 5 HOH A 46 546 116 HOH HOH . H 5 HOH A 47 547 72 HOH HOH . H 5 HOH A 48 548 173 HOH HOH . H 5 HOH A 49 549 8 HOH HOH . H 5 HOH A 50 550 46 HOH HOH . H 5 HOH A 51 551 76 HOH HOH . H 5 HOH A 52 552 134 HOH HOH . H 5 HOH A 53 553 7 HOH HOH . H 5 HOH A 54 554 50 HOH HOH . H 5 HOH A 55 555 167 HOH HOH . H 5 HOH A 56 556 206 HOH HOH . H 5 HOH A 57 557 10 HOH HOH . H 5 HOH A 58 558 174 HOH HOH . H 5 HOH A 59 559 45 HOH HOH . H 5 HOH A 60 560 175 HOH HOH . H 5 HOH A 61 561 132 HOH HOH . H 5 HOH A 62 562 19 HOH HOH . H 5 HOH A 63 563 182 HOH HOH . H 5 HOH A 64 564 23 HOH HOH . H 5 HOH A 65 565 159 HOH HOH . H 5 HOH A 66 566 16 HOH HOH . H 5 HOH A 67 567 142 HOH HOH . H 5 HOH A 68 568 117 HOH HOH . H 5 HOH A 69 569 158 HOH HOH . H 5 HOH A 70 570 150 HOH HOH . H 5 HOH A 71 571 205 HOH HOH . H 5 HOH A 72 572 49 HOH HOH . H 5 HOH A 73 573 100 HOH HOH . H 5 HOH A 74 574 5 HOH HOH . H 5 HOH A 75 575 163 HOH HOH . H 5 HOH A 76 576 196 HOH HOH . H 5 HOH A 77 577 80 HOH HOH . H 5 HOH A 78 578 43 HOH HOH . H 5 HOH A 79 579 34 HOH HOH . H 5 HOH A 80 580 63 HOH HOH . H 5 HOH A 81 581 208 HOH HOH . H 5 HOH A 82 582 101 HOH HOH . H 5 HOH A 83 583 32 HOH HOH . H 5 HOH A 84 584 188 HOH HOH . H 5 HOH A 85 585 203 HOH HOH . H 5 HOH A 86 586 185 HOH HOH . H 5 HOH A 87 587 152 HOH HOH . H 5 HOH A 88 588 22 HOH HOH . H 5 HOH A 89 589 62 HOH HOH . H 5 HOH A 90 590 4 HOH HOH . H 5 HOH A 91 591 138 HOH HOH . H 5 HOH A 92 592 118 HOH HOH . H 5 HOH A 93 593 211 HOH HOH . H 5 HOH A 94 594 201 HOH HOH . H 5 HOH A 95 595 30 HOH HOH . H 5 HOH A 96 596 77 HOH HOH . H 5 HOH A 97 597 56 HOH HOH . H 5 HOH A 98 598 176 HOH HOH . H 5 HOH A 99 599 47 HOH HOH . H 5 HOH A 100 600 57 HOH HOH . H 5 HOH A 101 601 192 HOH HOH . H 5 HOH A 102 602 160 HOH HOH . H 5 HOH A 103 603 133 HOH HOH . H 5 HOH A 104 604 147 HOH HOH . H 5 HOH A 105 605 37 HOH HOH . H 5 HOH A 106 606 41 HOH HOH . H 5 HOH A 107 607 119 HOH HOH . H 5 HOH A 108 608 154 HOH HOH . H 5 HOH A 109 609 213 HOH HOH . H 5 HOH A 110 610 178 HOH HOH . H 5 HOH A 111 611 38 HOH HOH . H 5 HOH A 112 612 126 HOH HOH . H 5 HOH A 113 613 191 HOH HOH . H 5 HOH A 114 614 161 HOH HOH . H 5 HOH A 115 615 146 HOH HOH . H 5 HOH A 116 616 169 HOH HOH . H 5 HOH A 117 617 129 HOH HOH . H 5 HOH A 118 618 135 HOH HOH . H 5 HOH A 119 619 165 HOH HOH . H 5 HOH A 120 620 82 HOH HOH . H 5 HOH A 121 621 69 HOH HOH . H 5 HOH A 122 622 168 HOH HOH . H 5 HOH A 123 623 207 HOH HOH . H 5 HOH A 124 624 51 HOH HOH . H 5 HOH A 125 625 26 HOH HOH . I 5 HOH B 1 501 162 HOH HOH . I 5 HOH B 2 502 130 HOH HOH . I 5 HOH B 3 503 39 HOH HOH . I 5 HOH B 4 504 15 HOH HOH . I 5 HOH B 5 505 84 HOH HOH . I 5 HOH B 6 506 120 HOH HOH . I 5 HOH B 7 507 170 HOH HOH . I 5 HOH B 8 508 44 HOH HOH . I 5 HOH B 9 509 75 HOH HOH . I 5 HOH B 10 510 68 HOH HOH . I 5 HOH B 11 511 124 HOH HOH . I 5 HOH B 12 512 90 HOH HOH . I 5 HOH B 13 513 54 HOH HOH . I 5 HOH B 14 514 88 HOH HOH . I 5 HOH B 15 515 136 HOH HOH . I 5 HOH B 16 516 108 HOH HOH . I 5 HOH B 17 517 99 HOH HOH . I 5 HOH B 18 518 181 HOH HOH . I 5 HOH B 19 519 14 HOH HOH . I 5 HOH B 20 520 93 HOH HOH . I 5 HOH B 21 521 60 HOH HOH . I 5 HOH B 22 522 74 HOH HOH . I 5 HOH B 23 523 61 HOH HOH . I 5 HOH B 24 524 113 HOH HOH . I 5 HOH B 25 525 48 HOH HOH . I 5 HOH B 26 526 127 HOH HOH . I 5 HOH B 27 527 104 HOH HOH . I 5 HOH B 28 528 172 HOH HOH . I 5 HOH B 29 529 140 HOH HOH . I 5 HOH B 30 530 193 HOH HOH . I 5 HOH B 31 531 128 HOH HOH . I 5 HOH B 32 532 109 HOH HOH . I 5 HOH B 33 533 122 HOH HOH . I 5 HOH B 34 534 98 HOH HOH . I 5 HOH B 35 535 3 HOH HOH . I 5 HOH B 36 536 92 HOH HOH . I 5 HOH B 37 537 111 HOH HOH . I 5 HOH B 38 538 31 HOH HOH . I 5 HOH B 39 539 112 HOH HOH . I 5 HOH B 40 540 87 HOH HOH . I 5 HOH B 41 541 6 HOH HOH . I 5 HOH B 42 542 21 HOH HOH . I 5 HOH B 43 543 202 HOH HOH . I 5 HOH B 44 544 42 HOH HOH . I 5 HOH B 45 545 78 HOH HOH . I 5 HOH B 46 546 25 HOH HOH . I 5 HOH B 47 547 33 HOH HOH . I 5 HOH B 48 548 187 HOH HOH . I 5 HOH B 49 549 155 HOH HOH . I 5 HOH B 50 550 27 HOH HOH . I 5 HOH B 51 551 186 HOH HOH . I 5 HOH B 52 552 110 HOH HOH . I 5 HOH B 53 553 9 HOH HOH . I 5 HOH B 54 554 65 HOH HOH . I 5 HOH B 55 555 141 HOH HOH . I 5 HOH B 56 556 194 HOH HOH . I 5 HOH B 57 557 164 HOH HOH . I 5 HOH B 58 558 179 HOH HOH . I 5 HOH B 59 559 143 HOH HOH . I 5 HOH B 60 560 35 HOH HOH . I 5 HOH B 61 561 86 HOH HOH . I 5 HOH B 62 562 24 HOH HOH . I 5 HOH B 63 563 199 HOH HOH . I 5 HOH B 64 564 58 HOH HOH . I 5 HOH B 65 565 144 HOH HOH . I 5 HOH B 66 566 210 HOH HOH . I 5 HOH B 67 567 66 HOH HOH . I 5 HOH B 68 568 139 HOH HOH . I 5 HOH B 69 569 156 HOH HOH . I 5 HOH B 70 570 114 HOH HOH . I 5 HOH B 71 571 20 HOH HOH . I 5 HOH B 72 572 71 HOH HOH . I 5 HOH B 73 573 212 HOH HOH . I 5 HOH B 74 574 195 HOH HOH . I 5 HOH B 75 575 85 HOH HOH . I 5 HOH B 76 576 153 HOH HOH . I 5 HOH B 77 577 204 HOH HOH . I 5 HOH B 78 578 190 HOH HOH . I 5 HOH B 79 579 180 HOH HOH . I 5 HOH B 80 580 166 HOH HOH . I 5 HOH B 81 581 145 HOH HOH . I 5 HOH B 82 582 151 HOH HOH . I 5 HOH B 83 583 157 HOH HOH . I 5 HOH B 84 584 123 HOH HOH . I 5 HOH B 85 585 28 HOH HOH . I 5 HOH B 86 586 67 HOH HOH . I 5 HOH B 87 587 121 HOH HOH . I 5 HOH B 88 588 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 4 -12.694 1.422 34.426 1 49.13 ? C1 PGE 403 B 1 HETATM 2 O O1 PGE . . . G 4 -12.046 2.528 35.067 1 49.11 ? O1 PGE 403 B 1 HETATM 3 C C2 PGE . . . G 4 -13.516 1.902 33.237 1 49.35 ? C2 PGE 403 B 1 HETATM 4 O O2 PGE . . . G 4 -13.554 0.878 32.24 1 49.54 ? O2 PGE 403 B 1 HETATM 5 C C3 PGE . . . G 4 -13.406 1.378 30.909 1 49.39 ? C3 PGE 403 B 1 HETATM 6 C C4 PGE . . . G 4 -13.976 0.366 29.923 1 48.96 ? C4 PGE 403 B 1 HETATM 7 O O4 PGE . . . G 4 -14.312 -1.123 25.498 1 48.01 ? O4 PGE 403 B 1 HETATM 8 C C6 PGE . . . G 4 -13.531 -0.259 26.336 1 48.31 ? C6 PGE 403 B 1 HETATM 9 C C5 PGE . . . G 4 -14.32 0.11 27.586 1 48.56 ? C5 PGE 403 B 1 HETATM 10 O O3 PGE . . . G 4 -13.442 0.583 28.612 1 49.17 ? O3 PGE 403 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 10 #