data_5D7Q
#
_model_server_result.job_id            T6bP64_BIHxa-NhQfk-bfQ 
_model_server_result.datetime_utc      '2024-10-18 10:26:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d7q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":403}' 
#
_entry.id    5D7Q 
#
_exptl.entry_id    5D7Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              262.735 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6S)-2-chloro-5,6,7,8,9,10-hexahydrocyclohepta[b]indole-6-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D7Q 
_cell.length_a            77.34 
_cell.length_b            78.17 
_cell.length_c            114.68 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D7Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc5 B SG CYS 143 B CYS 195 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc6 B SG CYS 148 B CYS 200 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc7 B SG CYS 169 B CYS 221 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc8 B SG CYS 172 B CYS 224 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
#
_chem_comp.formula           'C14 H15 Cl N2 O' 
_chem_comp.formula_weight    262.735 
_chem_comp.id                4I5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6S)-2-chloro-5,6,7,8,9,10-hexahydrocyclohepta[b]indole-6-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 CL1 4I5 sing 1 n n 
C1 C2 4I5 doub 2 n y 
C1 C6 4I5 sing 3 n y 
N1 C14 4I5 sing 4 n n 
O1 C14 4I5 doub 5 n n 
C2 C3 4I5 sing 6 n y 
N2 C4 4I5 sing 7 n y 
N2 C8 4I5 sing 8 n y 
C3 C4 4I5 doub 9 n y 
C4 C5 4I5 sing 10 n y 
C5 C6 4I5 doub 11 n y 
C5 C7 4I5 sing 12 n y 
C7 C8 4I5 doub 13 n y 
C7 C13 4I5 sing 14 n n 
C8 C9 4I5 sing 15 n n 
C9 C10 4I5 sing 16 n n 
C9 C14 4I5 sing 17 n n 
C10 C11 4I5 sing 18 n n 
C11 C12 4I5 sing 19 n n 
C12 C13 4I5 sing 20 n n 
N1 HN1 4I5 sing 21 n n 
N1 HN1A 4I5 sing 22 n n 
C2 H2 4I5 sing 23 n n 
N2 HN2 4I5 sing 24 n n 
C3 H3 4I5 sing 25 n n 
C6 H6 4I5 sing 26 n n 
C9 H9 4I5 sing 27 n n 
C10 H10 4I5 sing 28 n n 
C10 H10A 4I5 sing 29 n n 
C11 H11 4I5 sing 30 n n 
C11 H11A 4I5 sing 31 n n 
C12 H12 4I5 sing 32 n n 
C12 H12A 4I5 sing 33 n n 
C13 H13 4I5 sing 34 n n 
C13 H13A 4I5 sing 35 n n 
#
_atom_sites.entry_id                     5D7Q 
_atom_sites.fract_transf_matrix[1][1]    0.01293 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 400 ZN ZN . 
D 3 AR6 A 1 402 1 AR6 AR6 . 
E 4 4I5 A 1 403 3 4I5 4I5 . 
F 4 4I5 A 1 404 4 4I5 4I5 . 
G 2 ZN B 1 401 400 ZN ZN . 
H 3 AR6 B 1 402 2 AR6 AR6 . 
I 4 4I5 B 1 403 5 4I5 4I5 . 
J 4 4I5 B 1 404 6 4I5 4I5 . 
K 5 HOH A 1 501 120 HOH HOH . 
K 5 HOH A 2 502 94 HOH HOH . 
K 5 HOH A 3 503 71 HOH HOH . 
K 5 HOH A 4 504 129 HOH HOH . 
K 5 HOH A 5 505 53 HOH HOH . 
K 5 HOH A 6 506 30 HOH HOH . 
K 5 HOH A 7 507 137 HOH HOH . 
K 5 HOH A 8 508 39 HOH HOH . 
K 5 HOH A 9 509 136 HOH HOH . 
K 5 HOH A 10 510 61 HOH HOH . 
K 5 HOH A 11 511 56 HOH HOH . 
K 5 HOH A 12 512 13 HOH HOH . 
K 5 HOH A 13 513 3 HOH HOH . 
K 5 HOH A 14 514 22 HOH HOH . 
K 5 HOH A 15 515 67 HOH HOH . 
K 5 HOH A 16 516 18 HOH HOH . 
K 5 HOH A 17 517 82 HOH HOH . 
K 5 HOH A 18 518 51 HOH HOH . 
K 5 HOH A 19 519 69 HOH HOH . 
K 5 HOH A 20 520 16 HOH HOH . 
K 5 HOH A 21 521 48 HOH HOH . 
K 5 HOH A 22 522 86 HOH HOH . 
K 5 HOH A 23 523 19 HOH HOH . 
K 5 HOH A 24 524 113 HOH HOH . 
K 5 HOH A 25 525 10 HOH HOH . 
K 5 HOH A 26 526 55 HOH HOH . 
K 5 HOH A 27 527 1 HOH HOH . 
K 5 HOH A 28 528 75 HOH HOH . 
K 5 HOH A 29 529 79 HOH HOH . 
K 5 HOH A 30 530 89 HOH HOH . 
K 5 HOH A 31 531 95 HOH HOH . 
K 5 HOH A 32 532 105 HOH HOH . 
K 5 HOH A 33 533 45 HOH HOH . 
K 5 HOH A 34 534 84 HOH HOH . 
K 5 HOH A 35 535 101 HOH HOH . 
K 5 HOH A 36 536 107 HOH HOH . 
K 5 HOH A 37 537 77 HOH HOH . 
K 5 HOH A 38 538 21 HOH HOH . 
K 5 HOH A 39 539 76 HOH HOH . 
K 5 HOH A 40 540 131 HOH HOH . 
K 5 HOH A 41 541 35 HOH HOH . 
K 5 HOH A 42 542 28 HOH HOH . 
K 5 HOH A 43 543 38 HOH HOH . 
K 5 HOH A 44 544 68 HOH HOH . 
K 5 HOH A 45 545 12 HOH HOH . 
K 5 HOH A 46 546 88 HOH HOH . 
K 5 HOH A 47 547 81 HOH HOH . 
K 5 HOH A 48 548 33 HOH HOH . 
K 5 HOH A 49 549 44 HOH HOH . 
K 5 HOH A 50 550 111 HOH HOH . 
K 5 HOH A 51 551 70 HOH HOH . 
K 5 HOH A 52 552 34 HOH HOH . 
K 5 HOH A 53 553 87 HOH HOH . 
K 5 HOH A 54 554 119 HOH HOH . 
K 5 HOH A 55 555 118 HOH HOH . 
K 5 HOH A 56 556 102 HOH HOH . 
K 5 HOH A 57 557 24 HOH HOH . 
K 5 HOH A 58 558 52 HOH HOH . 
K 5 HOH A 59 559 50 HOH HOH . 
K 5 HOH A 60 560 85 HOH HOH . 
K 5 HOH A 61 561 72 HOH HOH . 
K 5 HOH A 62 562 122 HOH HOH . 
K 5 HOH A 63 563 63 HOH HOH . 
K 5 HOH A 64 564 25 HOH HOH . 
K 5 HOH A 65 565 92 HOH HOH . 
K 5 HOH A 66 566 66 HOH HOH . 
K 5 HOH A 67 567 64 HOH HOH . 
K 5 HOH A 68 568 128 HOH HOH . 
K 5 HOH A 69 569 117 HOH HOH . 
K 5 HOH A 70 570 124 HOH HOH . 
K 5 HOH A 71 571 125 HOH HOH . 
K 5 HOH A 72 572 100 HOH HOH . 
K 5 HOH A 73 573 130 HOH HOH . 
K 5 HOH A 74 574 15 HOH HOH . 
K 5 HOH A 75 575 114 HOH HOH . 
K 5 HOH A 76 576 73 HOH HOH . 
K 5 HOH A 77 577 37 HOH HOH . 
K 5 HOH A 78 578 42 HOH HOH . 
K 5 HOH A 79 579 65 HOH HOH . 
K 5 HOH A 80 580 9 HOH HOH . 
K 5 HOH A 81 581 80 HOH HOH . 
K 5 HOH A 82 582 20 HOH HOH . 
K 5 HOH A 83 583 126 HOH HOH . 
K 5 HOH A 84 584 78 HOH HOH . 
K 5 HOH A 85 585 106 HOH HOH . 
K 5 HOH A 86 586 108 HOH HOH . 
K 5 HOH A 87 587 116 HOH HOH . 
K 5 HOH A 88 588 112 HOH HOH . 
L 5 HOH B 1 501 23 HOH HOH . 
L 5 HOH B 2 502 6 HOH HOH . 
L 5 HOH B 3 503 99 HOH HOH . 
L 5 HOH B 4 504 41 HOH HOH . 
L 5 HOH B 5 505 59 HOH HOH . 
L 5 HOH B 6 506 4 HOH HOH . 
L 5 HOH B 7 507 93 HOH HOH . 
L 5 HOH B 8 508 133 HOH HOH . 
L 5 HOH B 9 509 74 HOH HOH . 
L 5 HOH B 10 510 103 HOH HOH . 
L 5 HOH B 11 511 5 HOH HOH . 
L 5 HOH B 12 512 60 HOH HOH . 
L 5 HOH B 13 513 110 HOH HOH . 
L 5 HOH B 14 514 14 HOH HOH . 
L 5 HOH B 15 515 123 HOH HOH . 
L 5 HOH B 16 516 57 HOH HOH . 
L 5 HOH B 17 517 58 HOH HOH . 
L 5 HOH B 18 518 11 HOH HOH . 
L 5 HOH B 19 519 127 HOH HOH . 
L 5 HOH B 20 520 54 HOH HOH . 
L 5 HOH B 21 521 98 HOH HOH . 
L 5 HOH B 22 522 8 HOH HOH . 
L 5 HOH B 23 523 36 HOH HOH . 
L 5 HOH B 24 524 46 HOH HOH . 
L 5 HOH B 25 525 49 HOH HOH . 
L 5 HOH B 26 526 121 HOH HOH . 
L 5 HOH B 27 527 7 HOH HOH . 
L 5 HOH B 28 528 27 HOH HOH . 
L 5 HOH B 29 529 47 HOH HOH . 
L 5 HOH B 30 530 91 HOH HOH . 
L 5 HOH B 31 531 26 HOH HOH . 
L 5 HOH B 32 532 115 HOH HOH . 
L 5 HOH B 33 533 2 HOH HOH . 
L 5 HOH B 34 534 43 HOH HOH . 
L 5 HOH B 35 535 135 HOH HOH . 
L 5 HOH B 36 536 31 HOH HOH . 
L 5 HOH B 37 537 17 HOH HOH . 
L 5 HOH B 38 538 134 HOH HOH . 
L 5 HOH B 39 539 29 HOH HOH . 
L 5 HOH B 40 540 32 HOH HOH . 
L 5 HOH B 41 541 132 HOH HOH . 
L 5 HOH B 42 542 104 HOH HOH . 
L 5 HOH B 43 543 90 HOH HOH . 
L 5 HOH B 44 544 83 HOH HOH . 
L 5 HOH B 45 545 97 HOH HOH . 
L 5 HOH B 46 546 109 HOH HOH . 
L 5 HOH B 47 547 62 HOH HOH . 
L 5 HOH B 48 548 40 HOH HOH . 
L 5 HOH B 49 549 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4I5 . . . I 4 -6.851 -7.016 57.707 1 21.37 ? C1 4I5 403 B 1 
HETATM 2 N N1 4I5 . . . I 4 -10.387 -11.826 63.314 1 21.2 ? N1 4I5 403 B 1 
HETATM 3 O O1 4I5 . . . I 4 -8.557 -10.602 62.851 1 21.34 ? O1 4I5 403 B 1 
HETATM 4 CL CL1 4I5 . . . I 4 -6.371 -5.552 56.907 1 22.51 ? CL1 4I5 403 B 1 
HETATM 5 C C2 4I5 . . . I 4 -6.293 -8.212 57.296 1 19.14 ? C2 4I5 403 B 1 
HETATM 6 N N2 4I5 . . . I 4 -8.362 -10.379 59.497 1 19.25 ? N2 4I5 403 B 1 
HETATM 7 C C3 4I5 . . . I 4 -6.722 -9.396 57.867 1 19.34 ? C3 4I5 403 B 1 
HETATM 8 C C4 4I5 . . . I 4 -7.709 -9.353 58.844 1 19.75 ? C4 4I5 403 B 1 
HETATM 9 C C5 4I5 . . . I 4 -8.255 -8.137 59.289 1 20.74 ? C5 4I5 403 B 1 
HETATM 10 C C6 4I5 . . . I 4 -7.812 -6.95 58.705 1 21.21 ? C6 4I5 403 B 1 
HETATM 11 C C7 4I5 . . . I 4 -9.26 -8.465 60.265 1 20.69 ? C7 4I5 403 B 1 
HETATM 12 C C8 4I5 . . . I 4 -9.302 -9.824 60.345 1 20.52 ? C8 4I5 403 B 1 
HETATM 13 C C9 4I5 . . . I 4 -10.21 -10.751 61.133 1 20.61 ? C9 4I5 403 B 1 
HETATM 14 C C10 4I5 . . . I 4 -11.655 -10.217 61.183 1 21.14 ? C10 4I5 403 B 1 
HETATM 15 C C11 4I5 . . . I 4 -11.917 -8.921 61.934 1 21.09 ? C11 4I5 403 B 1 
HETATM 16 C C12 4I5 . . . I 4 -11.521 -7.649 61.194 1 21.78 ? C12 4I5 403 B 1 
HETATM 17 C C13 4I5 . . . I 4 -10.017 -7.418 61.041 1 21.44 ? C13 4I5 403 B 1 
HETATM 18 C C14 4I5 . . . I 4 -9.66 -11.049 62.525 1 20.21 ? C14 4I5 403 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#