data_5D7S # _model_server_result.job_id pDwAXOkq6LrXDraK4NuhUg _model_server_result.datetime_utc '2024-12-02 00:31:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5D7S # _exptl.entry_id 5D7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S)-butane-2,3-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D7S _cell.length_a 41.823 _cell.length_b 66.922 _cell.length_c 156.657 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 85 L CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 132 L CYS 132 1_555 A SG CYS 191 L CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BUD _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S)-butane-2,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BUD sing 70 n n C1 H1 BUD sing 71 n n C1 H1A BUD sing 72 n n C1 H1B BUD sing 73 n n O1 C2 BUD sing 74 n n O1 HO1 BUD sing 75 n n C2 C3 BUD sing 76 n n C2 H2 BUD sing 77 n n C3 O2 BUD sing 78 n n O2 HO2 BUD sing 79 n n C3 C4 BUD sing 80 n n C3 H3 BUD sing 81 n n C4 H4 BUD sing 82 n n C4 H4A BUD sing 83 n n C4 H4B BUD sing 84 n n # _atom_sites.entry_id 5D7S _atom_sites.fract_transf_matrix[1][1] 0.02391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BUD L 1 301 1 BUD BU2 . D 3 BUD L 1 302 2 BUD BU2 . E 4 HOH L 1 401 190 HOH HOH . E 4 HOH L 2 402 136 HOH HOH . E 4 HOH L 3 403 149 HOH HOH . E 4 HOH L 4 404 173 HOH HOH . E 4 HOH L 5 405 110 HOH HOH . E 4 HOH L 6 406 25 HOH HOH . E 4 HOH L 7 407 146 HOH HOH . E 4 HOH L 8 408 175 HOH HOH . E 4 HOH L 9 409 81 HOH HOH . E 4 HOH L 10 410 99 HOH HOH . E 4 HOH L 11 411 195 HOH HOH . E 4 HOH L 12 412 18 HOH HOH . E 4 HOH L 13 413 159 HOH HOH . E 4 HOH L 14 414 1 HOH HOH . E 4 HOH L 15 415 164 HOH HOH . E 4 HOH L 16 416 194 HOH HOH . E 4 HOH L 17 417 9 HOH HOH . E 4 HOH L 18 418 154 HOH HOH . E 4 HOH L 19 419 193 HOH HOH . E 4 HOH L 20 420 117 HOH HOH . E 4 HOH L 21 421 8 HOH HOH . E 4 HOH L 22 422 135 HOH HOH . E 4 HOH L 23 423 2 HOH HOH . E 4 HOH L 24 424 106 HOH HOH . E 4 HOH L 25 425 33 HOH HOH . E 4 HOH L 26 426 112 HOH HOH . E 4 HOH L 27 427 111 HOH HOH . E 4 HOH L 28 428 76 HOH HOH . E 4 HOH L 29 429 24 HOH HOH . E 4 HOH L 30 430 64 HOH HOH . E 4 HOH L 31 431 125 HOH HOH . E 4 HOH L 32 432 192 HOH HOH . E 4 HOH L 33 433 17 HOH HOH . E 4 HOH L 34 434 59 HOH HOH . E 4 HOH L 35 435 69 HOH HOH . E 4 HOH L 36 436 165 HOH HOH . E 4 HOH L 37 437 163 HOH HOH . E 4 HOH L 38 438 191 HOH HOH . E 4 HOH L 39 439 39 HOH HOH . E 4 HOH L 40 440 42 HOH HOH . E 4 HOH L 41 441 197 HOH HOH . E 4 HOH L 42 442 120 HOH HOH . E 4 HOH L 43 443 168 HOH HOH . E 4 HOH L 44 444 93 HOH HOH . E 4 HOH L 45 445 118 HOH HOH . E 4 HOH L 46 446 6 HOH HOH . E 4 HOH L 47 447 170 HOH HOH . E 4 HOH L 48 448 108 HOH HOH . E 4 HOH L 49 449 116 HOH HOH . E 4 HOH L 50 450 13 HOH HOH . E 4 HOH L 51 451 180 HOH HOH . E 4 HOH L 52 452 141 HOH HOH . E 4 HOH L 53 453 137 HOH HOH . E 4 HOH L 54 454 196 HOH HOH . E 4 HOH L 55 455 31 HOH HOH . E 4 HOH L 56 456 172 HOH HOH . E 4 HOH L 57 457 185 HOH HOH . E 4 HOH L 58 458 14 HOH HOH . E 4 HOH L 59 459 22 HOH HOH . E 4 HOH L 60 460 97 HOH HOH . E 4 HOH L 61 461 157 HOH HOH . E 4 HOH L 62 462 140 HOH HOH . E 4 HOH L 63 463 153 HOH HOH . E 4 HOH L 64 464 133 HOH HOH . E 4 HOH L 65 465 37 HOH HOH . E 4 HOH L 66 466 66 HOH HOH . E 4 HOH L 67 467 139 HOH HOH . E 4 HOH L 68 468 4 HOH HOH . E 4 HOH L 69 469 36 HOH HOH . E 4 HOH L 70 470 109 HOH HOH . E 4 HOH L 71 471 51 HOH HOH . E 4 HOH L 72 472 144 HOH HOH . E 4 HOH L 73 473 19 HOH HOH . E 4 HOH L 74 474 12 HOH HOH . E 4 HOH L 75 475 82 HOH HOH . E 4 HOH L 76 476 75 HOH HOH . E 4 HOH L 77 477 86 HOH HOH . E 4 HOH L 78 478 178 HOH HOH . E 4 HOH L 79 479 167 HOH HOH . E 4 HOH L 80 480 16 HOH HOH . E 4 HOH L 81 481 71 HOH HOH . E 4 HOH L 82 482 56 HOH HOH . E 4 HOH L 83 483 74 HOH HOH . E 4 HOH L 84 484 105 HOH HOH . E 4 HOH L 85 485 89 HOH HOH . E 4 HOH L 86 486 63 HOH HOH . E 4 HOH L 87 487 44 HOH HOH . E 4 HOH L 88 488 177 HOH HOH . E 4 HOH L 89 489 61 HOH HOH . E 4 HOH L 90 490 62 HOH HOH . E 4 HOH L 91 491 101 HOH HOH . E 4 HOH L 92 492 129 HOH HOH . E 4 HOH L 93 493 55 HOH HOH . E 4 HOH L 94 494 43 HOH HOH . E 4 HOH L 95 495 53 HOH HOH . E 4 HOH L 96 496 34 HOH HOH . E 4 HOH L 97 497 171 HOH HOH . E 4 HOH L 98 498 166 HOH HOH . E 4 HOH L 99 499 35 HOH HOH . E 4 HOH L 100 500 5 HOH HOH . E 4 HOH L 101 501 29 HOH HOH . E 4 HOH L 102 502 52 HOH HOH . E 4 HOH L 103 503 114 HOH HOH . E 4 HOH L 104 504 7 HOH HOH . E 4 HOH L 105 505 15 HOH HOH . E 4 HOH L 106 506 156 HOH HOH . E 4 HOH L 107 507 87 HOH HOH . E 4 HOH L 108 508 94 HOH HOH . E 4 HOH L 109 509 151 HOH HOH . E 4 HOH L 110 510 77 HOH HOH . E 4 HOH L 111 511 102 HOH HOH . E 4 HOH L 112 512 3 HOH HOH . E 4 HOH L 113 513 10 HOH HOH . E 4 HOH L 114 514 100 HOH HOH . E 4 HOH L 115 515 95 HOH HOH . E 4 HOH L 116 516 187 HOH HOH . E 4 HOH L 117 517 186 HOH HOH . E 4 HOH L 118 518 184 HOH HOH . F 4 HOH H 1 301 104 HOH HOH . F 4 HOH H 2 302 65 HOH HOH . F 4 HOH H 3 303 28 HOH HOH . F 4 HOH H 4 304 128 HOH HOH . F 4 HOH H 5 305 91 HOH HOH . F 4 HOH H 6 306 11 HOH HOH . F 4 HOH H 7 307 131 HOH HOH . F 4 HOH H 8 308 124 HOH HOH . F 4 HOH H 9 309 150 HOH HOH . F 4 HOH H 10 310 143 HOH HOH . F 4 HOH H 11 311 41 HOH HOH . F 4 HOH H 12 312 158 HOH HOH . F 4 HOH H 13 313 162 HOH HOH . F 4 HOH H 14 314 152 HOH HOH . F 4 HOH H 15 315 179 HOH HOH . F 4 HOH H 16 316 181 HOH HOH . F 4 HOH H 17 317 113 HOH HOH . F 4 HOH H 18 318 78 HOH HOH . F 4 HOH H 19 319 70 HOH HOH . F 4 HOH H 20 320 123 HOH HOH . F 4 HOH H 21 321 21 HOH HOH . F 4 HOH H 22 322 80 HOH HOH . F 4 HOH H 23 323 32 HOH HOH . F 4 HOH H 24 324 48 HOH HOH . F 4 HOH H 25 325 50 HOH HOH . F 4 HOH H 26 326 115 HOH HOH . F 4 HOH H 27 327 30 HOH HOH . F 4 HOH H 28 328 155 HOH HOH . F 4 HOH H 29 329 147 HOH HOH . F 4 HOH H 30 330 182 HOH HOH . F 4 HOH H 31 331 84 HOH HOH . F 4 HOH H 32 332 47 HOH HOH . F 4 HOH H 33 333 38 HOH HOH . F 4 HOH H 34 334 26 HOH HOH . F 4 HOH H 35 335 27 HOH HOH . F 4 HOH H 36 336 73 HOH HOH . F 4 HOH H 37 337 92 HOH HOH . F 4 HOH H 38 338 72 HOH HOH . F 4 HOH H 39 339 122 HOH HOH . F 4 HOH H 40 340 45 HOH HOH . F 4 HOH H 41 341 138 HOH HOH . F 4 HOH H 42 342 40 HOH HOH . F 4 HOH H 43 343 119 HOH HOH . F 4 HOH H 44 344 130 HOH HOH . F 4 HOH H 45 345 96 HOH HOH . F 4 HOH H 46 346 145 HOH HOH . F 4 HOH H 47 347 198 HOH HOH . F 4 HOH H 48 348 132 HOH HOH . F 4 HOH H 49 349 148 HOH HOH . F 4 HOH H 50 350 134 HOH HOH . F 4 HOH H 51 351 49 HOH HOH . F 4 HOH H 52 352 98 HOH HOH . F 4 HOH H 53 353 174 HOH HOH . F 4 HOH H 54 354 60 HOH HOH . F 4 HOH H 55 355 142 HOH HOH . F 4 HOH H 56 356 85 HOH HOH . F 4 HOH H 57 357 199 HOH HOH . F 4 HOH H 58 358 127 HOH HOH . F 4 HOH H 59 359 169 HOH HOH . F 4 HOH H 60 360 20 HOH HOH . F 4 HOH H 61 361 103 HOH HOH . F 4 HOH H 62 362 126 HOH HOH . F 4 HOH H 63 363 79 HOH HOH . F 4 HOH H 64 364 161 HOH HOH . F 4 HOH H 65 365 176 HOH HOH . F 4 HOH H 66 366 83 HOH HOH . F 4 HOH H 67 367 88 HOH HOH . F 4 HOH H 68 368 54 HOH HOH . F 4 HOH H 69 369 67 HOH HOH . F 4 HOH H 70 370 68 HOH HOH . F 4 HOH H 71 371 160 HOH HOH . F 4 HOH H 72 372 90 HOH HOH . F 4 HOH H 73 373 188 HOH HOH . F 4 HOH H 74 374 58 HOH HOH . F 4 HOH H 75 375 57 HOH HOH . F 4 HOH H 76 376 121 HOH HOH . F 4 HOH H 77 377 107 HOH HOH . F 4 HOH H 78 378 189 HOH HOH . F 4 HOH H 79 379 23 HOH HOH . F 4 HOH H 80 380 183 HOH HOH . F 4 HOH H 81 381 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BUD . . . C 3 -4.248 9.343 35.795 1 49.06 ? C1 BUD 301 L 1 HETATM 2 O O1 BUD . . . C 3 -4.285 10.613 37.91 1 57.47 ? O1 BUD 301 L 1 HETATM 3 C C2 BUD . . . C 3 -3.435 10.051 36.888 1 49.62 ? C2 BUD 301 L 1 HETATM 4 O O2 BUD . . . C 3 -1.867 11.877 37.357 1 37.54 ? O2 BUD 301 L 1 HETATM 5 C C3 BUD . . . C 3 -2.573 11.163 36.311 1 51.01 ? C3 BUD 301 L 1 HETATM 6 C C4 BUD . . . C 3 -1.592 10.579 35.3 1 31.12 ? C4 BUD 301 L 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #