data_5D7S
#
_model_server_result.job_id            poO2_R6BGxCg-IqzrMpvVw 
_model_server_result.datetime_utc      '2024-12-02 00:35:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d7s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5D7S 
#
_exptl.entry_id    5D7S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,3S)-butane-2,3-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D7S 
_cell.length_a            41.823 
_cell.length_b            66.922 
_cell.length_c            156.657 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D7S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 85 L CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 132 L CYS 132 1_555 A SG CYS 191 L CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BUD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,3S)-butane-2,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BUD sing 70 n n 
C1 H1 BUD sing 71 n n 
C1 H1A BUD sing 72 n n 
C1 H1B BUD sing 73 n n 
O1 C2 BUD sing 74 n n 
O1 HO1 BUD sing 75 n n 
C2 C3 BUD sing 76 n n 
C2 H2 BUD sing 77 n n 
C3 O2 BUD sing 78 n n 
O2 HO2 BUD sing 79 n n 
C3 C4 BUD sing 80 n n 
C3 H3 BUD sing 81 n n 
C4 H4 BUD sing 82 n n 
C4 H4A BUD sing 83 n n 
C4 H4B BUD sing 84 n n 
#
_atom_sites.entry_id                     5D7S 
_atom_sites.fract_transf_matrix[1][1]    0.02391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BUD L 1 301 1 BUD BU2 . 
D 3 BUD L 1 302 2 BUD BU2 . 
E 4 HOH L 1 401 190 HOH HOH . 
E 4 HOH L 2 402 136 HOH HOH . 
E 4 HOH L 3 403 149 HOH HOH . 
E 4 HOH L 4 404 173 HOH HOH . 
E 4 HOH L 5 405 110 HOH HOH . 
E 4 HOH L 6 406 25 HOH HOH . 
E 4 HOH L 7 407 146 HOH HOH . 
E 4 HOH L 8 408 175 HOH HOH . 
E 4 HOH L 9 409 81 HOH HOH . 
E 4 HOH L 10 410 99 HOH HOH . 
E 4 HOH L 11 411 195 HOH HOH . 
E 4 HOH L 12 412 18 HOH HOH . 
E 4 HOH L 13 413 159 HOH HOH . 
E 4 HOH L 14 414 1 HOH HOH . 
E 4 HOH L 15 415 164 HOH HOH . 
E 4 HOH L 16 416 194 HOH HOH . 
E 4 HOH L 17 417 9 HOH HOH . 
E 4 HOH L 18 418 154 HOH HOH . 
E 4 HOH L 19 419 193 HOH HOH . 
E 4 HOH L 20 420 117 HOH HOH . 
E 4 HOH L 21 421 8 HOH HOH . 
E 4 HOH L 22 422 135 HOH HOH . 
E 4 HOH L 23 423 2 HOH HOH . 
E 4 HOH L 24 424 106 HOH HOH . 
E 4 HOH L 25 425 33 HOH HOH . 
E 4 HOH L 26 426 112 HOH HOH . 
E 4 HOH L 27 427 111 HOH HOH . 
E 4 HOH L 28 428 76 HOH HOH . 
E 4 HOH L 29 429 24 HOH HOH . 
E 4 HOH L 30 430 64 HOH HOH . 
E 4 HOH L 31 431 125 HOH HOH . 
E 4 HOH L 32 432 192 HOH HOH . 
E 4 HOH L 33 433 17 HOH HOH . 
E 4 HOH L 34 434 59 HOH HOH . 
E 4 HOH L 35 435 69 HOH HOH . 
E 4 HOH L 36 436 165 HOH HOH . 
E 4 HOH L 37 437 163 HOH HOH . 
E 4 HOH L 38 438 191 HOH HOH . 
E 4 HOH L 39 439 39 HOH HOH . 
E 4 HOH L 40 440 42 HOH HOH . 
E 4 HOH L 41 441 197 HOH HOH . 
E 4 HOH L 42 442 120 HOH HOH . 
E 4 HOH L 43 443 168 HOH HOH . 
E 4 HOH L 44 444 93 HOH HOH . 
E 4 HOH L 45 445 118 HOH HOH . 
E 4 HOH L 46 446 6 HOH HOH . 
E 4 HOH L 47 447 170 HOH HOH . 
E 4 HOH L 48 448 108 HOH HOH . 
E 4 HOH L 49 449 116 HOH HOH . 
E 4 HOH L 50 450 13 HOH HOH . 
E 4 HOH L 51 451 180 HOH HOH . 
E 4 HOH L 52 452 141 HOH HOH . 
E 4 HOH L 53 453 137 HOH HOH . 
E 4 HOH L 54 454 196 HOH HOH . 
E 4 HOH L 55 455 31 HOH HOH . 
E 4 HOH L 56 456 172 HOH HOH . 
E 4 HOH L 57 457 185 HOH HOH . 
E 4 HOH L 58 458 14 HOH HOH . 
E 4 HOH L 59 459 22 HOH HOH . 
E 4 HOH L 60 460 97 HOH HOH . 
E 4 HOH L 61 461 157 HOH HOH . 
E 4 HOH L 62 462 140 HOH HOH . 
E 4 HOH L 63 463 153 HOH HOH . 
E 4 HOH L 64 464 133 HOH HOH . 
E 4 HOH L 65 465 37 HOH HOH . 
E 4 HOH L 66 466 66 HOH HOH . 
E 4 HOH L 67 467 139 HOH HOH . 
E 4 HOH L 68 468 4 HOH HOH . 
E 4 HOH L 69 469 36 HOH HOH . 
E 4 HOH L 70 470 109 HOH HOH . 
E 4 HOH L 71 471 51 HOH HOH . 
E 4 HOH L 72 472 144 HOH HOH . 
E 4 HOH L 73 473 19 HOH HOH . 
E 4 HOH L 74 474 12 HOH HOH . 
E 4 HOH L 75 475 82 HOH HOH . 
E 4 HOH L 76 476 75 HOH HOH . 
E 4 HOH L 77 477 86 HOH HOH . 
E 4 HOH L 78 478 178 HOH HOH . 
E 4 HOH L 79 479 167 HOH HOH . 
E 4 HOH L 80 480 16 HOH HOH . 
E 4 HOH L 81 481 71 HOH HOH . 
E 4 HOH L 82 482 56 HOH HOH . 
E 4 HOH L 83 483 74 HOH HOH . 
E 4 HOH L 84 484 105 HOH HOH . 
E 4 HOH L 85 485 89 HOH HOH . 
E 4 HOH L 86 486 63 HOH HOH . 
E 4 HOH L 87 487 44 HOH HOH . 
E 4 HOH L 88 488 177 HOH HOH . 
E 4 HOH L 89 489 61 HOH HOH . 
E 4 HOH L 90 490 62 HOH HOH . 
E 4 HOH L 91 491 101 HOH HOH . 
E 4 HOH L 92 492 129 HOH HOH . 
E 4 HOH L 93 493 55 HOH HOH . 
E 4 HOH L 94 494 43 HOH HOH . 
E 4 HOH L 95 495 53 HOH HOH . 
E 4 HOH L 96 496 34 HOH HOH . 
E 4 HOH L 97 497 171 HOH HOH . 
E 4 HOH L 98 498 166 HOH HOH . 
E 4 HOH L 99 499 35 HOH HOH . 
E 4 HOH L 100 500 5 HOH HOH . 
E 4 HOH L 101 501 29 HOH HOH . 
E 4 HOH L 102 502 52 HOH HOH . 
E 4 HOH L 103 503 114 HOH HOH . 
E 4 HOH L 104 504 7 HOH HOH . 
E 4 HOH L 105 505 15 HOH HOH . 
E 4 HOH L 106 506 156 HOH HOH . 
E 4 HOH L 107 507 87 HOH HOH . 
E 4 HOH L 108 508 94 HOH HOH . 
E 4 HOH L 109 509 151 HOH HOH . 
E 4 HOH L 110 510 77 HOH HOH . 
E 4 HOH L 111 511 102 HOH HOH . 
E 4 HOH L 112 512 3 HOH HOH . 
E 4 HOH L 113 513 10 HOH HOH . 
E 4 HOH L 114 514 100 HOH HOH . 
E 4 HOH L 115 515 95 HOH HOH . 
E 4 HOH L 116 516 187 HOH HOH . 
E 4 HOH L 117 517 186 HOH HOH . 
E 4 HOH L 118 518 184 HOH HOH . 
F 4 HOH H 1 301 104 HOH HOH . 
F 4 HOH H 2 302 65 HOH HOH . 
F 4 HOH H 3 303 28 HOH HOH . 
F 4 HOH H 4 304 128 HOH HOH . 
F 4 HOH H 5 305 91 HOH HOH . 
F 4 HOH H 6 306 11 HOH HOH . 
F 4 HOH H 7 307 131 HOH HOH . 
F 4 HOH H 8 308 124 HOH HOH . 
F 4 HOH H 9 309 150 HOH HOH . 
F 4 HOH H 10 310 143 HOH HOH . 
F 4 HOH H 11 311 41 HOH HOH . 
F 4 HOH H 12 312 158 HOH HOH . 
F 4 HOH H 13 313 162 HOH HOH . 
F 4 HOH H 14 314 152 HOH HOH . 
F 4 HOH H 15 315 179 HOH HOH . 
F 4 HOH H 16 316 181 HOH HOH . 
F 4 HOH H 17 317 113 HOH HOH . 
F 4 HOH H 18 318 78 HOH HOH . 
F 4 HOH H 19 319 70 HOH HOH . 
F 4 HOH H 20 320 123 HOH HOH . 
F 4 HOH H 21 321 21 HOH HOH . 
F 4 HOH H 22 322 80 HOH HOH . 
F 4 HOH H 23 323 32 HOH HOH . 
F 4 HOH H 24 324 48 HOH HOH . 
F 4 HOH H 25 325 50 HOH HOH . 
F 4 HOH H 26 326 115 HOH HOH . 
F 4 HOH H 27 327 30 HOH HOH . 
F 4 HOH H 28 328 155 HOH HOH . 
F 4 HOH H 29 329 147 HOH HOH . 
F 4 HOH H 30 330 182 HOH HOH . 
F 4 HOH H 31 331 84 HOH HOH . 
F 4 HOH H 32 332 47 HOH HOH . 
F 4 HOH H 33 333 38 HOH HOH . 
F 4 HOH H 34 334 26 HOH HOH . 
F 4 HOH H 35 335 27 HOH HOH . 
F 4 HOH H 36 336 73 HOH HOH . 
F 4 HOH H 37 337 92 HOH HOH . 
F 4 HOH H 38 338 72 HOH HOH . 
F 4 HOH H 39 339 122 HOH HOH . 
F 4 HOH H 40 340 45 HOH HOH . 
F 4 HOH H 41 341 138 HOH HOH . 
F 4 HOH H 42 342 40 HOH HOH . 
F 4 HOH H 43 343 119 HOH HOH . 
F 4 HOH H 44 344 130 HOH HOH . 
F 4 HOH H 45 345 96 HOH HOH . 
F 4 HOH H 46 346 145 HOH HOH . 
F 4 HOH H 47 347 198 HOH HOH . 
F 4 HOH H 48 348 132 HOH HOH . 
F 4 HOH H 49 349 148 HOH HOH . 
F 4 HOH H 50 350 134 HOH HOH . 
F 4 HOH H 51 351 49 HOH HOH . 
F 4 HOH H 52 352 98 HOH HOH . 
F 4 HOH H 53 353 174 HOH HOH . 
F 4 HOH H 54 354 60 HOH HOH . 
F 4 HOH H 55 355 142 HOH HOH . 
F 4 HOH H 56 356 85 HOH HOH . 
F 4 HOH H 57 357 199 HOH HOH . 
F 4 HOH H 58 358 127 HOH HOH . 
F 4 HOH H 59 359 169 HOH HOH . 
F 4 HOH H 60 360 20 HOH HOH . 
F 4 HOH H 61 361 103 HOH HOH . 
F 4 HOH H 62 362 126 HOH HOH . 
F 4 HOH H 63 363 79 HOH HOH . 
F 4 HOH H 64 364 161 HOH HOH . 
F 4 HOH H 65 365 176 HOH HOH . 
F 4 HOH H 66 366 83 HOH HOH . 
F 4 HOH H 67 367 88 HOH HOH . 
F 4 HOH H 68 368 54 HOH HOH . 
F 4 HOH H 69 369 67 HOH HOH . 
F 4 HOH H 70 370 68 HOH HOH . 
F 4 HOH H 71 371 160 HOH HOH . 
F 4 HOH H 72 372 90 HOH HOH . 
F 4 HOH H 73 373 188 HOH HOH . 
F 4 HOH H 74 374 58 HOH HOH . 
F 4 HOH H 75 375 57 HOH HOH . 
F 4 HOH H 76 376 121 HOH HOH . 
F 4 HOH H 77 377 107 HOH HOH . 
F 4 HOH H 78 378 189 HOH HOH . 
F 4 HOH H 79 379 23 HOH HOH . 
F 4 HOH H 80 380 183 HOH HOH . 
F 4 HOH H 81 381 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BUD . . . D 3 17.074 14.575 43.519 1 58.6 ? C1 BUD 302 L 1 
HETATM 2 O O1 BUD . . . D 3 15.019 15.826 43.584 1 57.21 ? O1 BUD 302 L 1 
HETATM 3 C C2 BUD . . . D 3 15.623 14.589 43.997 1 55.77 ? C2 BUD 302 L 1 
HETATM 4 O O2 BUD . . . D 3 14.129 14.299 45.865 1 48 ? O2 BUD 302 L 1 
HETATM 5 C C3 BUD . . . D 3 15.513 14.443 45.514 1 53.72 ? C3 BUD 302 L 1 
HETATM 6 C C4 BUD . . . D 3 16.297 13.261 46.08 1 50.18 ? C4 BUD 302 L 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#