data_5D7X # _model_server_result.job_id D6RqqRvJcY8NJy3ZJ_EobQ _model_server_result.datetime_utc '2025-09-04 22:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5D7X # _exptl.entry_id 5D7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D7X _cell.length_a 60.365 _cell.length_b 60.365 _cell.length_c 63.607 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 5D7X _atom_sites.fract_transf_matrix[1][1] 0.016566 _atom_sites.fract_transf_matrix[1][2] 0.009564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 801 1 NO3 NO3 . C 3 XZ8 A 1 802 1 XZ8 DRG . D 4 HOH A 1 901 144 HOH HOH . D 4 HOH A 2 902 195 HOH HOH . D 4 HOH A 3 903 157 HOH HOH . D 4 HOH A 4 904 92 HOH HOH . D 4 HOH A 5 905 124 HOH HOH . D 4 HOH A 6 906 159 HOH HOH . D 4 HOH A 7 907 196 HOH HOH . D 4 HOH A 8 908 165 HOH HOH . D 4 HOH A 9 909 93 HOH HOH . D 4 HOH A 10 910 50 HOH HOH . D 4 HOH A 11 911 173 HOH HOH . D 4 HOH A 12 912 174 HOH HOH . D 4 HOH A 13 913 155 HOH HOH . D 4 HOH A 14 914 164 HOH HOH . D 4 HOH A 15 915 113 HOH HOH . D 4 HOH A 16 916 219 HOH HOH . D 4 HOH A 17 917 14 HOH HOH . D 4 HOH A 18 918 187 HOH HOH . D 4 HOH A 19 919 193 HOH HOH . D 4 HOH A 20 920 210 HOH HOH . D 4 HOH A 21 921 19 HOH HOH . D 4 HOH A 22 922 188 HOH HOH . D 4 HOH A 23 923 139 HOH HOH . D 4 HOH A 24 924 233 HOH HOH . D 4 HOH A 25 925 143 HOH HOH . D 4 HOH A 26 926 146 HOH HOH . D 4 HOH A 27 927 151 HOH HOH . D 4 HOH A 28 928 7 HOH HOH . D 4 HOH A 29 929 27 HOH HOH . D 4 HOH A 30 930 194 HOH HOH . D 4 HOH A 31 931 80 HOH HOH . D 4 HOH A 32 932 73 HOH HOH . D 4 HOH A 33 933 15 HOH HOH . D 4 HOH A 34 934 104 HOH HOH . D 4 HOH A 35 935 38 HOH HOH . D 4 HOH A 36 936 48 HOH HOH . D 4 HOH A 37 937 134 HOH HOH . D 4 HOH A 38 938 6 HOH HOH . D 4 HOH A 39 939 74 HOH HOH . D 4 HOH A 40 940 43 HOH HOH . D 4 HOH A 41 941 175 HOH HOH . D 4 HOH A 42 942 37 HOH HOH . D 4 HOH A 43 943 30 HOH HOH . D 4 HOH A 44 944 138 HOH HOH . D 4 HOH A 45 945 77 HOH HOH . D 4 HOH A 46 946 2 HOH HOH . D 4 HOH A 47 947 32 HOH HOH . D 4 HOH A 48 948 28 HOH HOH . D 4 HOH A 49 949 179 HOH HOH . D 4 HOH A 50 950 122 HOH HOH . D 4 HOH A 51 951 190 HOH HOH . D 4 HOH A 52 952 176 HOH HOH . D 4 HOH A 53 953 24 HOH HOH . D 4 HOH A 54 954 21 HOH HOH . D 4 HOH A 55 955 5 HOH HOH . D 4 HOH A 56 956 20 HOH HOH . D 4 HOH A 57 957 130 HOH HOH . D 4 HOH A 58 958 181 HOH HOH . D 4 HOH A 59 959 145 HOH HOH . D 4 HOH A 60 960 58 HOH HOH . D 4 HOH A 61 961 54 HOH HOH . D 4 HOH A 62 962 9 HOH HOH . D 4 HOH A 63 963 4 HOH HOH . D 4 HOH A 64 964 44 HOH HOH . D 4 HOH A 65 965 23 HOH HOH . D 4 HOH A 66 966 57 HOH HOH . D 4 HOH A 67 967 68 HOH HOH . D 4 HOH A 68 968 47 HOH HOH . D 4 HOH A 69 969 56 HOH HOH . D 4 HOH A 70 970 209 HOH HOH . D 4 HOH A 71 971 60 HOH HOH . D 4 HOH A 72 972 33 HOH HOH . D 4 HOH A 73 973 132 HOH HOH . D 4 HOH A 74 974 61 HOH HOH . D 4 HOH A 75 975 59 HOH HOH . D 4 HOH A 76 976 136 HOH HOH . D 4 HOH A 77 977 53 HOH HOH . D 4 HOH A 78 978 172 HOH HOH . D 4 HOH A 79 979 200 HOH HOH . D 4 HOH A 80 980 1 HOH HOH . D 4 HOH A 81 981 76 HOH HOH . D 4 HOH A 82 982 12 HOH HOH . D 4 HOH A 83 983 3 HOH HOH . D 4 HOH A 84 984 17 HOH HOH . D 4 HOH A 85 985 49 HOH HOH . D 4 HOH A 86 986 185 HOH HOH . D 4 HOH A 87 987 70 HOH HOH . D 4 HOH A 88 988 101 HOH HOH . D 4 HOH A 89 989 11 HOH HOH . D 4 HOH A 90 990 205 HOH HOH . D 4 HOH A 91 991 31 HOH HOH . D 4 HOH A 92 992 211 HOH HOH . D 4 HOH A 93 993 100 HOH HOH . D 4 HOH A 94 994 141 HOH HOH . D 4 HOH A 95 995 18 HOH HOH . D 4 HOH A 96 996 154 HOH HOH . D 4 HOH A 97 997 231 HOH HOH . D 4 HOH A 98 998 16 HOH HOH . D 4 HOH A 99 999 25 HOH HOH . D 4 HOH A 100 1000 109 HOH HOH . D 4 HOH A 101 1001 52 HOH HOH . D 4 HOH A 102 1002 29 HOH HOH . D 4 HOH A 103 1003 121 HOH HOH . D 4 HOH A 104 1004 103 HOH HOH . D 4 HOH A 105 1005 107 HOH HOH . D 4 HOH A 106 1006 215 HOH HOH . D 4 HOH A 107 1007 198 HOH HOH . D 4 HOH A 108 1008 72 HOH HOH . D 4 HOH A 109 1009 131 HOH HOH . D 4 HOH A 110 1010 34 HOH HOH . D 4 HOH A 111 1011 97 HOH HOH . D 4 HOH A 112 1012 41 HOH HOH . D 4 HOH A 113 1013 36 HOH HOH . D 4 HOH A 114 1014 201 HOH HOH . D 4 HOH A 115 1015 150 HOH HOH . D 4 HOH A 116 1016 94 HOH HOH . D 4 HOH A 117 1017 13 HOH HOH . D 4 HOH A 118 1018 10 HOH HOH . D 4 HOH A 119 1019 129 HOH HOH . D 4 HOH A 120 1020 158 HOH HOH . D 4 HOH A 121 1021 65 HOH HOH . D 4 HOH A 122 1022 227 HOH HOH . D 4 HOH A 123 1023 168 HOH HOH . D 4 HOH A 124 1024 64 HOH HOH . D 4 HOH A 125 1025 106 HOH HOH . D 4 HOH A 126 1026 147 HOH HOH . D 4 HOH A 127 1027 120 HOH HOH . D 4 HOH A 128 1028 99 HOH HOH . D 4 HOH A 129 1029 171 HOH HOH . D 4 HOH A 130 1030 42 HOH HOH . D 4 HOH A 131 1031 149 HOH HOH . D 4 HOH A 132 1032 62 HOH HOH . D 4 HOH A 133 1033 26 HOH HOH . D 4 HOH A 134 1034 22 HOH HOH . D 4 HOH A 135 1035 192 HOH HOH . D 4 HOH A 136 1036 221 HOH HOH . D 4 HOH A 137 1037 160 HOH HOH . D 4 HOH A 138 1038 152 HOH HOH . D 4 HOH A 139 1039 8 HOH HOH . D 4 HOH A 140 1040 71 HOH HOH . D 4 HOH A 141 1041 45 HOH HOH . D 4 HOH A 142 1042 140 HOH HOH . D 4 HOH A 143 1043 208 HOH HOH . D 4 HOH A 144 1044 142 HOH HOH . D 4 HOH A 145 1045 182 HOH HOH . D 4 HOH A 146 1046 218 HOH HOH . D 4 HOH A 147 1047 127 HOH HOH . D 4 HOH A 148 1048 203 HOH HOH . D 4 HOH A 149 1049 46 HOH HOH . D 4 HOH A 150 1050 163 HOH HOH . D 4 HOH A 151 1051 213 HOH HOH . D 4 HOH A 152 1052 177 HOH HOH . D 4 HOH A 153 1053 189 HOH HOH . D 4 HOH A 154 1054 110 HOH HOH . D 4 HOH A 155 1055 225 HOH HOH . D 4 HOH A 156 1056 78 HOH HOH . D 4 HOH A 157 1057 95 HOH HOH . D 4 HOH A 158 1058 212 HOH HOH . D 4 HOH A 159 1059 125 HOH HOH . D 4 HOH A 160 1060 180 HOH HOH . D 4 HOH A 161 1061 232 HOH HOH . D 4 HOH A 162 1062 135 HOH HOH . D 4 HOH A 163 1063 133 HOH HOH . D 4 HOH A 164 1064 229 HOH HOH . D 4 HOH A 165 1065 162 HOH HOH . D 4 HOH A 166 1066 35 HOH HOH . D 4 HOH A 167 1067 167 HOH HOH . D 4 HOH A 168 1068 128 HOH HOH . D 4 HOH A 169 1069 178 HOH HOH . D 4 HOH A 170 1070 118 HOH HOH . D 4 HOH A 171 1071 169 HOH HOH . D 4 HOH A 172 1072 170 HOH HOH . D 4 HOH A 173 1073 156 HOH HOH . D 4 HOH A 174 1074 115 HOH HOH . D 4 HOH A 175 1075 96 HOH HOH . D 4 HOH A 176 1076 116 HOH HOH . D 4 HOH A 177 1077 220 HOH HOH . D 4 HOH A 178 1078 82 HOH HOH . D 4 HOH A 179 1079 148 HOH HOH . D 4 HOH A 180 1080 112 HOH HOH . D 4 HOH A 181 1081 111 HOH HOH . D 4 HOH A 182 1082 166 HOH HOH . D 4 HOH A 183 1083 63 HOH HOH . D 4 HOH A 184 1084 55 HOH HOH . D 4 HOH A 185 1085 204 HOH HOH . D 4 HOH A 186 1086 214 HOH HOH . D 4 HOH A 187 1087 86 HOH HOH . D 4 HOH A 188 1088 217 HOH HOH . D 4 HOH A 189 1089 223 HOH HOH . D 4 HOH A 190 1090 69 HOH HOH . D 4 HOH A 191 1091 39 HOH HOH . D 4 HOH A 192 1092 85 HOH HOH . D 4 HOH A 193 1093 230 HOH HOH . D 4 HOH A 194 1094 114 HOH HOH . D 4 HOH A 195 1095 206 HOH HOH . D 4 HOH A 196 1096 153 HOH HOH . D 4 HOH A 197 1097 40 HOH HOH . D 4 HOH A 198 1098 224 HOH HOH . D 4 HOH A 199 1099 89 HOH HOH . D 4 HOH A 200 1100 226 HOH HOH . D 4 HOH A 201 1101 186 HOH HOH . D 4 HOH A 202 1102 202 HOH HOH . D 4 HOH A 203 1103 126 HOH HOH . D 4 HOH A 204 1104 98 HOH HOH . D 4 HOH A 205 1105 137 HOH HOH . D 4 HOH A 206 1106 67 HOH HOH . D 4 HOH A 207 1107 184 HOH HOH . D 4 HOH A 208 1108 123 HOH HOH . D 4 HOH A 209 1109 191 HOH HOH . D 4 HOH A 210 1110 66 HOH HOH . D 4 HOH A 211 1111 197 HOH HOH . D 4 HOH A 212 1112 79 HOH HOH . D 4 HOH A 213 1113 117 HOH HOH . D 4 HOH A 214 1114 183 HOH HOH . D 4 HOH A 215 1115 108 HOH HOH . D 4 HOH A 216 1116 88 HOH HOH . D 4 HOH A 217 1117 228 HOH HOH . D 4 HOH A 218 1118 75 HOH HOH . D 4 HOH A 219 1119 90 HOH HOH . D 4 HOH A 220 1120 216 HOH HOH . D 4 HOH A 221 1121 83 HOH HOH . D 4 HOH A 222 1122 105 HOH HOH . D 4 HOH A 223 1123 119 HOH HOH . D 4 HOH A 224 1124 81 HOH HOH . D 4 HOH A 225 1125 161 HOH HOH . D 4 HOH A 226 1126 222 HOH HOH . D 4 HOH A 227 1127 207 HOH HOH . D 4 HOH A 228 1128 51 HOH HOH . D 4 HOH A 229 1129 84 HOH HOH . D 4 HOH A 230 1130 87 HOH HOH . D 4 HOH A 231 1131 102 HOH HOH . D 4 HOH A 232 1132 199 HOH HOH . D 4 HOH A 233 1133 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . B 2 16.745 -8.739 1.825 1 27.75 ? N NO3 801 A 1 HETATM 2 O O1 NO3 . . . B 2 16.936 -7.493 2.334 1 19.98 ? O1 NO3 801 A 1 HETATM 3 O O2 NO3 . . . B 2 17.834 -9.528 1.473 1 31.99 ? O2 NO3 801 A 1 HETATM 4 O O3 NO3 . . . B 2 15.478 -9.235 1.713 1 27.22 ? O3 NO3 801 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #