data_5D7X # _model_server_result.job_id eLcTbweKKqctc8Jcp5ls7A _model_server_result.datetime_utc '2024-10-19 16:43:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5D7X # _exptl.entry_id 5D7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.272 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(1-acetyl-1H-indol-3-yl)-5-methyl-1,2-dihydro-3H-pyrazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D7X _cell.length_a 60.365 _cell.length_b 60.365 _cell.length_c 63.607 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H13 N3 O2' _chem_comp.formula_weight 255.272 _chem_comp.id XZ8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(1-acetyl-1H-indol-3-yl)-5-methyl-1,2-dihydro-3H-pyrazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C12 XZ8 sing 351 n n N11 N10 XZ8 sing 352 n n O13 C12 XZ8 doub 353 n n C12 C07 XZ8 sing 354 n n C01 C02 XZ8 sing 355 n n N10 C08 XZ8 sing 356 n n C05 C06 XZ8 doub 357 n y C05 N04 XZ8 sing 358 n y C07 C08 XZ8 doub 359 n n C07 C06 XZ8 sing 360 n n C08 C09 XZ8 sing 361 n n C02 N04 XZ8 sing 362 n n C02 O03 XZ8 doub 363 n n C06 C14 XZ8 sing 364 n y N04 C19 XZ8 sing 365 n y C14 C19 XZ8 doub 366 n y C14 C15 XZ8 sing 367 n y C19 C18 XZ8 sing 368 n y C15 C16 XZ8 doub 369 n y C18 C17 XZ8 doub 370 n y C16 C17 XZ8 sing 371 n y C01 H1 XZ8 sing 372 n n C01 H2 XZ8 sing 373 n n C01 H3 XZ8 sing 374 n n C05 H4 XZ8 sing 375 n n C09 H6 XZ8 sing 376 n n C09 H7 XZ8 sing 377 n n C09 H8 XZ8 sing 378 n n N11 H9 XZ8 sing 379 n n C15 H10 XZ8 sing 380 n n C16 H11 XZ8 sing 381 n n C17 H12 XZ8 sing 382 n n C18 H13 XZ8 sing 383 n n N10 H5 XZ8 sing 384 n n # _atom_sites.entry_id 5D7X _atom_sites.fract_transf_matrix[1][1] 0.016566 _atom_sites.fract_transf_matrix[1][2] 0.009564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 801 1 NO3 NO3 . C 3 XZ8 A 1 802 1 XZ8 DRG . D 4 HOH A 1 901 144 HOH HOH . D 4 HOH A 2 902 195 HOH HOH . D 4 HOH A 3 903 157 HOH HOH . D 4 HOH A 4 904 92 HOH HOH . D 4 HOH A 5 905 124 HOH HOH . D 4 HOH A 6 906 159 HOH HOH . D 4 HOH A 7 907 196 HOH HOH . D 4 HOH A 8 908 165 HOH HOH . D 4 HOH A 9 909 93 HOH HOH . D 4 HOH A 10 910 50 HOH HOH . D 4 HOH A 11 911 173 HOH HOH . D 4 HOH A 12 912 174 HOH HOH . D 4 HOH A 13 913 155 HOH HOH . D 4 HOH A 14 914 164 HOH HOH . D 4 HOH A 15 915 113 HOH HOH . D 4 HOH A 16 916 219 HOH HOH . D 4 HOH A 17 917 14 HOH HOH . D 4 HOH A 18 918 187 HOH HOH . D 4 HOH A 19 919 193 HOH HOH . D 4 HOH A 20 920 210 HOH HOH . D 4 HOH A 21 921 19 HOH HOH . D 4 HOH A 22 922 188 HOH HOH . D 4 HOH A 23 923 139 HOH HOH . D 4 HOH A 24 924 233 HOH HOH . D 4 HOH A 25 925 143 HOH HOH . D 4 HOH A 26 926 146 HOH HOH . D 4 HOH A 27 927 151 HOH HOH . D 4 HOH A 28 928 7 HOH HOH . D 4 HOH A 29 929 27 HOH HOH . D 4 HOH A 30 930 194 HOH HOH . D 4 HOH A 31 931 80 HOH HOH . D 4 HOH A 32 932 73 HOH HOH . D 4 HOH A 33 933 15 HOH HOH . D 4 HOH A 34 934 104 HOH HOH . D 4 HOH A 35 935 38 HOH HOH . D 4 HOH A 36 936 48 HOH HOH . D 4 HOH A 37 937 134 HOH HOH . D 4 HOH A 38 938 6 HOH HOH . D 4 HOH A 39 939 74 HOH HOH . D 4 HOH A 40 940 43 HOH HOH . D 4 HOH A 41 941 175 HOH HOH . D 4 HOH A 42 942 37 HOH HOH . D 4 HOH A 43 943 30 HOH HOH . D 4 HOH A 44 944 138 HOH HOH . D 4 HOH A 45 945 77 HOH HOH . D 4 HOH A 46 946 2 HOH HOH . D 4 HOH A 47 947 32 HOH HOH . D 4 HOH A 48 948 28 HOH HOH . D 4 HOH A 49 949 179 HOH HOH . D 4 HOH A 50 950 122 HOH HOH . D 4 HOH A 51 951 190 HOH HOH . D 4 HOH A 52 952 176 HOH HOH . D 4 HOH A 53 953 24 HOH HOH . D 4 HOH A 54 954 21 HOH HOH . D 4 HOH A 55 955 5 HOH HOH . D 4 HOH A 56 956 20 HOH HOH . D 4 HOH A 57 957 130 HOH HOH . D 4 HOH A 58 958 181 HOH HOH . D 4 HOH A 59 959 145 HOH HOH . D 4 HOH A 60 960 58 HOH HOH . D 4 HOH A 61 961 54 HOH HOH . D 4 HOH A 62 962 9 HOH HOH . D 4 HOH A 63 963 4 HOH HOH . D 4 HOH A 64 964 44 HOH HOH . D 4 HOH A 65 965 23 HOH HOH . D 4 HOH A 66 966 57 HOH HOH . D 4 HOH A 67 967 68 HOH HOH . D 4 HOH A 68 968 47 HOH HOH . D 4 HOH A 69 969 56 HOH HOH . D 4 HOH A 70 970 209 HOH HOH . D 4 HOH A 71 971 60 HOH HOH . D 4 HOH A 72 972 33 HOH HOH . D 4 HOH A 73 973 132 HOH HOH . D 4 HOH A 74 974 61 HOH HOH . D 4 HOH A 75 975 59 HOH HOH . D 4 HOH A 76 976 136 HOH HOH . D 4 HOH A 77 977 53 HOH HOH . D 4 HOH A 78 978 172 HOH HOH . D 4 HOH A 79 979 200 HOH HOH . D 4 HOH A 80 980 1 HOH HOH . D 4 HOH A 81 981 76 HOH HOH . D 4 HOH A 82 982 12 HOH HOH . D 4 HOH A 83 983 3 HOH HOH . D 4 HOH A 84 984 17 HOH HOH . D 4 HOH A 85 985 49 HOH HOH . D 4 HOH A 86 986 185 HOH HOH . D 4 HOH A 87 987 70 HOH HOH . D 4 HOH A 88 988 101 HOH HOH . D 4 HOH A 89 989 11 HOH HOH . D 4 HOH A 90 990 205 HOH HOH . D 4 HOH A 91 991 31 HOH HOH . D 4 HOH A 92 992 211 HOH HOH . D 4 HOH A 93 993 100 HOH HOH . D 4 HOH A 94 994 141 HOH HOH . D 4 HOH A 95 995 18 HOH HOH . D 4 HOH A 96 996 154 HOH HOH . D 4 HOH A 97 997 231 HOH HOH . D 4 HOH A 98 998 16 HOH HOH . D 4 HOH A 99 999 25 HOH HOH . D 4 HOH A 100 1000 109 HOH HOH . D 4 HOH A 101 1001 52 HOH HOH . D 4 HOH A 102 1002 29 HOH HOH . D 4 HOH A 103 1003 121 HOH HOH . D 4 HOH A 104 1004 103 HOH HOH . D 4 HOH A 105 1005 107 HOH HOH . D 4 HOH A 106 1006 215 HOH HOH . D 4 HOH A 107 1007 198 HOH HOH . D 4 HOH A 108 1008 72 HOH HOH . D 4 HOH A 109 1009 131 HOH HOH . D 4 HOH A 110 1010 34 HOH HOH . D 4 HOH A 111 1011 97 HOH HOH . D 4 HOH A 112 1012 41 HOH HOH . D 4 HOH A 113 1013 36 HOH HOH . D 4 HOH A 114 1014 201 HOH HOH . D 4 HOH A 115 1015 150 HOH HOH . D 4 HOH A 116 1016 94 HOH HOH . D 4 HOH A 117 1017 13 HOH HOH . D 4 HOH A 118 1018 10 HOH HOH . D 4 HOH A 119 1019 129 HOH HOH . D 4 HOH A 120 1020 158 HOH HOH . D 4 HOH A 121 1021 65 HOH HOH . D 4 HOH A 122 1022 227 HOH HOH . D 4 HOH A 123 1023 168 HOH HOH . D 4 HOH A 124 1024 64 HOH HOH . D 4 HOH A 125 1025 106 HOH HOH . D 4 HOH A 126 1026 147 HOH HOH . D 4 HOH A 127 1027 120 HOH HOH . D 4 HOH A 128 1028 99 HOH HOH . D 4 HOH A 129 1029 171 HOH HOH . D 4 HOH A 130 1030 42 HOH HOH . D 4 HOH A 131 1031 149 HOH HOH . D 4 HOH A 132 1032 62 HOH HOH . D 4 HOH A 133 1033 26 HOH HOH . D 4 HOH A 134 1034 22 HOH HOH . D 4 HOH A 135 1035 192 HOH HOH . D 4 HOH A 136 1036 221 HOH HOH . D 4 HOH A 137 1037 160 HOH HOH . D 4 HOH A 138 1038 152 HOH HOH . D 4 HOH A 139 1039 8 HOH HOH . D 4 HOH A 140 1040 71 HOH HOH . D 4 HOH A 141 1041 45 HOH HOH . D 4 HOH A 142 1042 140 HOH HOH . D 4 HOH A 143 1043 208 HOH HOH . D 4 HOH A 144 1044 142 HOH HOH . D 4 HOH A 145 1045 182 HOH HOH . D 4 HOH A 146 1046 218 HOH HOH . D 4 HOH A 147 1047 127 HOH HOH . D 4 HOH A 148 1048 203 HOH HOH . D 4 HOH A 149 1049 46 HOH HOH . D 4 HOH A 150 1050 163 HOH HOH . D 4 HOH A 151 1051 213 HOH HOH . D 4 HOH A 152 1052 177 HOH HOH . D 4 HOH A 153 1053 189 HOH HOH . D 4 HOH A 154 1054 110 HOH HOH . D 4 HOH A 155 1055 225 HOH HOH . D 4 HOH A 156 1056 78 HOH HOH . D 4 HOH A 157 1057 95 HOH HOH . D 4 HOH A 158 1058 212 HOH HOH . D 4 HOH A 159 1059 125 HOH HOH . D 4 HOH A 160 1060 180 HOH HOH . D 4 HOH A 161 1061 232 HOH HOH . D 4 HOH A 162 1062 135 HOH HOH . D 4 HOH A 163 1063 133 HOH HOH . D 4 HOH A 164 1064 229 HOH HOH . D 4 HOH A 165 1065 162 HOH HOH . D 4 HOH A 166 1066 35 HOH HOH . D 4 HOH A 167 1067 167 HOH HOH . D 4 HOH A 168 1068 128 HOH HOH . D 4 HOH A 169 1069 178 HOH HOH . D 4 HOH A 170 1070 118 HOH HOH . D 4 HOH A 171 1071 169 HOH HOH . D 4 HOH A 172 1072 170 HOH HOH . D 4 HOH A 173 1073 156 HOH HOH . D 4 HOH A 174 1074 115 HOH HOH . D 4 HOH A 175 1075 96 HOH HOH . D 4 HOH A 176 1076 116 HOH HOH . D 4 HOH A 177 1077 220 HOH HOH . D 4 HOH A 178 1078 82 HOH HOH . D 4 HOH A 179 1079 148 HOH HOH . D 4 HOH A 180 1080 112 HOH HOH . D 4 HOH A 181 1081 111 HOH HOH . D 4 HOH A 182 1082 166 HOH HOH . D 4 HOH A 183 1083 63 HOH HOH . D 4 HOH A 184 1084 55 HOH HOH . D 4 HOH A 185 1085 204 HOH HOH . D 4 HOH A 186 1086 214 HOH HOH . D 4 HOH A 187 1087 86 HOH HOH . D 4 HOH A 188 1088 217 HOH HOH . D 4 HOH A 189 1089 223 HOH HOH . D 4 HOH A 190 1090 69 HOH HOH . D 4 HOH A 191 1091 39 HOH HOH . D 4 HOH A 192 1092 85 HOH HOH . D 4 HOH A 193 1093 230 HOH HOH . D 4 HOH A 194 1094 114 HOH HOH . D 4 HOH A 195 1095 206 HOH HOH . D 4 HOH A 196 1096 153 HOH HOH . D 4 HOH A 197 1097 40 HOH HOH . D 4 HOH A 198 1098 224 HOH HOH . D 4 HOH A 199 1099 89 HOH HOH . D 4 HOH A 200 1100 226 HOH HOH . D 4 HOH A 201 1101 186 HOH HOH . D 4 HOH A 202 1102 202 HOH HOH . D 4 HOH A 203 1103 126 HOH HOH . D 4 HOH A 204 1104 98 HOH HOH . D 4 HOH A 205 1105 137 HOH HOH . D 4 HOH A 206 1106 67 HOH HOH . D 4 HOH A 207 1107 184 HOH HOH . D 4 HOH A 208 1108 123 HOH HOH . D 4 HOH A 209 1109 191 HOH HOH . D 4 HOH A 210 1110 66 HOH HOH . D 4 HOH A 211 1111 197 HOH HOH . D 4 HOH A 212 1112 79 HOH HOH . D 4 HOH A 213 1113 117 HOH HOH . D 4 HOH A 214 1114 183 HOH HOH . D 4 HOH A 215 1115 108 HOH HOH . D 4 HOH A 216 1116 88 HOH HOH . D 4 HOH A 217 1117 228 HOH HOH . D 4 HOH A 218 1118 75 HOH HOH . D 4 HOH A 219 1119 90 HOH HOH . D 4 HOH A 220 1120 216 HOH HOH . D 4 HOH A 221 1121 83 HOH HOH . D 4 HOH A 222 1122 105 HOH HOH . D 4 HOH A 223 1123 119 HOH HOH . D 4 HOH A 224 1124 81 HOH HOH . D 4 HOH A 225 1125 161 HOH HOH . D 4 HOH A 226 1126 222 HOH HOH . D 4 HOH A 227 1127 207 HOH HOH . D 4 HOH A 228 1128 51 HOH HOH . D 4 HOH A 229 1129 84 HOH HOH . D 4 HOH A 230 1130 87 HOH HOH . D 4 HOH A 231 1131 102 HOH HOH . D 4 HOH A 232 1132 199 HOH HOH . D 4 HOH A 233 1133 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XZ8 . . . C 3 9.325 -13.988 2.665 1 14.01 ? C01 XZ8 802 A 1 HETATM 2 C C02 XZ8 . . . C 3 8.073 -13.106 2.769 1 13.48 ? C02 XZ8 802 A 1 HETATM 3 O O03 XZ8 . . . C 3 7.267 -13.075 1.824 1 12.96 ? O03 XZ8 802 A 1 HETATM 4 N N04 XZ8 . . . C 3 7.906 -12.508 3.98 1 13.83 ? N04 XZ8 802 A 1 HETATM 5 C C05 XZ8 . . . C 3 8.776 -12.539 5.014 1 13.49 ? C05 XZ8 802 A 1 HETATM 6 C C06 XZ8 . . . C 3 8.27 -11.848 6.05 1 14.41 ? C06 XZ8 802 A 1 HETATM 7 C C07 XZ8 . . . C 3 8.853 -11.664 7.291 1 15.83 ? C07 XZ8 802 A 1 HETATM 8 C C08 XZ8 . . . C 3 9.46 -12.578 8.064 1 16.54 ? C08 XZ8 802 A 1 HETATM 9 C C09 XZ8 . . . C 3 9.676 -14.068 7.78 1 17.72 ? C09 XZ8 802 A 1 HETATM 10 N N10 XZ8 . . . C 3 9.877 -12.022 9.202 1 20.89 ? N10 XZ8 802 A 1 HETATM 11 N N11 XZ8 . . . C 3 9.581 -10.827 9.187 1 22.38 ? N11 XZ8 802 A 1 HETATM 12 C C12 XZ8 . . . C 3 8.946 -10.551 8.043 1 20.32 ? C12 XZ8 802 A 1 HETATM 13 O O13 XZ8 . . . C 3 8.536 -9.419 7.768 1 22.19 ? O13 XZ8 802 A 1 HETATM 14 C C14 XZ8 . . . C 3 7.064 -11.388 5.667 1 14.63 ? C14 XZ8 802 A 1 HETATM 15 C C15 XZ8 . . . C 3 6.145 -10.657 6.309 1 17.79 ? C15 XZ8 802 A 1 HETATM 16 C C16 XZ8 . . . C 3 4.956 -10.287 5.687 1 21.25 ? C16 XZ8 802 A 1 HETATM 17 C C17 XZ8 . . . C 3 4.73 -10.703 4.381 1 19.08 ? C17 XZ8 802 A 1 HETATM 18 C C18 XZ8 . . . C 3 5.71 -11.466 3.754 1 19.22 ? C18 XZ8 802 A 1 HETATM 19 C C19 XZ8 . . . C 3 6.844 -11.793 4.395 1 15.31 ? C19 XZ8 802 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #