data_5D85 # _model_server_result.job_id BsELVmzq5s8cWxmNPDOQDw _model_server_result.datetime_utc '2024-11-23 19:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5D85 # _exptl.entry_id 5D85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D85 _cell.length_a 56.741 _cell.length_b 117.408 _cell.length_c 47.818 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -56.741 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N2 O7 P' _chem_comp.formula_weight 318.22 _chem_comp.id P1T _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P P1T sing 267 n n OP1 HOP1 P1T sing 268 n n P OP2 P1T doub 269 n n P OP4 P1T sing 270 n n P OP3 P1T sing 271 n n OP3 HOP3 P1T sing 272 n n OP4 C5A P1T sing 273 n n C5A C5 P1T sing 274 n n C5A H5A1 P1T sing 275 n n C5A H5A2 P1T sing 276 n n C5 C4 P1T sing 277 n y C5 C6 P1T doub 278 n y C6 N1 P1T sing 279 n y C6 H6 P1T sing 280 n n N1 C2 P1T doub 281 n y C2 C3 P1T sing 282 n y C2 C2A P1T sing 283 n n C2A H2A1 P1T sing 284 n n C2A H2A2 P1T sing 285 n n C2A H2A3 P1T sing 286 n n C3 O3A P1T sing 287 n n C3 C4 P1T doub 288 n y O3A HO3A P1T sing 289 n n C4 C4A P1T sing 290 n n C4A N P1T sing 291 n n C4A H4A1 P1T sing 292 n n C4A H4A2 P1T sing 293 n n N CA P1T sing 294 n n N HN P1T sing 295 n n CA C P1T sing 296 n n CA CB P1T doub 297 n n CB HB1 P1T sing 298 n n CB HB2 P1T sing 299 n n C OXT P1T doub 300 n n C O P1T sing 301 n n O HO P1T sing 302 n n # _atom_sites.entry_id 5D85 _atom_sites.fract_transf_matrix[1][1] 0.017624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 401 1 FLC FLC . C 3 P1T A 1 402 1 P1T P1T . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 187 HOH HOH . E 5 HOH A 2 502 55 HOH HOH . E 5 HOH A 3 503 99 HOH HOH . E 5 HOH A 4 504 123 HOH HOH . E 5 HOH A 5 505 104 HOH HOH . E 5 HOH A 6 506 43 HOH HOH . E 5 HOH A 7 507 165 HOH HOH . E 5 HOH A 8 508 30 HOH HOH . E 5 HOH A 9 509 154 HOH HOH . E 5 HOH A 10 510 181 HOH HOH . E 5 HOH A 11 511 83 HOH HOH . E 5 HOH A 12 512 130 HOH HOH . E 5 HOH A 13 513 127 HOH HOH . E 5 HOH A 14 514 19 HOH HOH . E 5 HOH A 15 515 142 HOH HOH . E 5 HOH A 16 516 87 HOH HOH . E 5 HOH A 17 517 182 HOH HOH . E 5 HOH A 18 518 73 HOH HOH . E 5 HOH A 19 519 78 HOH HOH . E 5 HOH A 20 520 84 HOH HOH . E 5 HOH A 21 521 4 HOH HOH . E 5 HOH A 22 522 169 HOH HOH . E 5 HOH A 23 523 18 HOH HOH . E 5 HOH A 24 524 16 HOH HOH . E 5 HOH A 25 525 136 HOH HOH . E 5 HOH A 26 526 40 HOH HOH . E 5 HOH A 27 527 81 HOH HOH . E 5 HOH A 28 528 85 HOH HOH . E 5 HOH A 29 529 31 HOH HOH . E 5 HOH A 30 530 7 HOH HOH . E 5 HOH A 31 531 42 HOH HOH . E 5 HOH A 32 532 122 HOH HOH . E 5 HOH A 33 533 15 HOH HOH . E 5 HOH A 34 534 6 HOH HOH . E 5 HOH A 35 535 103 HOH HOH . E 5 HOH A 36 536 67 HOH HOH . E 5 HOH A 37 537 71 HOH HOH . E 5 HOH A 38 538 184 HOH HOH . E 5 HOH A 39 539 79 HOH HOH . E 5 HOH A 40 540 50 HOH HOH . E 5 HOH A 41 541 35 HOH HOH . E 5 HOH A 42 542 25 HOH HOH . E 5 HOH A 43 543 111 HOH HOH . E 5 HOH A 44 544 53 HOH HOH . E 5 HOH A 45 545 14 HOH HOH . E 5 HOH A 46 546 32 HOH HOH . E 5 HOH A 47 547 185 HOH HOH . E 5 HOH A 48 548 100 HOH HOH . E 5 HOH A 49 549 9 HOH HOH . E 5 HOH A 50 550 27 HOH HOH . E 5 HOH A 51 551 116 HOH HOH . E 5 HOH A 52 552 1 HOH HOH . E 5 HOH A 53 553 61 HOH HOH . E 5 HOH A 54 554 5 HOH HOH . E 5 HOH A 55 555 26 HOH HOH . E 5 HOH A 56 556 105 HOH HOH . E 5 HOH A 57 557 13 HOH HOH . E 5 HOH A 58 558 3 HOH HOH . E 5 HOH A 59 559 112 HOH HOH . E 5 HOH A 60 560 94 HOH HOH . E 5 HOH A 61 561 124 HOH HOH . E 5 HOH A 62 562 20 HOH HOH . E 5 HOH A 63 563 160 HOH HOH . E 5 HOH A 64 564 109 HOH HOH . E 5 HOH A 65 565 132 HOH HOH . E 5 HOH A 66 566 8 HOH HOH . E 5 HOH A 67 567 157 HOH HOH . E 5 HOH A 68 568 52 HOH HOH . E 5 HOH A 69 569 2 HOH HOH . E 5 HOH A 70 570 63 HOH HOH . E 5 HOH A 71 571 128 HOH HOH . E 5 HOH A 72 572 91 HOH HOH . E 5 HOH A 73 573 119 HOH HOH . E 5 HOH A 74 574 10 HOH HOH . E 5 HOH A 75 575 23 HOH HOH . E 5 HOH A 76 576 34 HOH HOH . E 5 HOH A 77 577 51 HOH HOH . E 5 HOH A 78 578 11 HOH HOH . E 5 HOH A 79 579 24 HOH HOH . E 5 HOH A 80 580 60 HOH HOH . E 5 HOH A 81 581 146 HOH HOH . E 5 HOH A 82 582 12 HOH HOH . E 5 HOH A 83 583 143 HOH HOH . E 5 HOH A 84 584 92 HOH HOH . E 5 HOH A 85 585 49 HOH HOH . E 5 HOH A 86 586 46 HOH HOH . E 5 HOH A 87 587 86 HOH HOH . E 5 HOH A 88 588 171 HOH HOH . E 5 HOH A 89 589 149 HOH HOH . E 5 HOH A 90 590 64 HOH HOH . E 5 HOH A 91 591 22 HOH HOH . E 5 HOH A 92 592 77 HOH HOH . E 5 HOH A 93 593 82 HOH HOH . E 5 HOH A 94 594 56 HOH HOH . E 5 HOH A 95 595 88 HOH HOH . E 5 HOH A 96 596 96 HOH HOH . E 5 HOH A 97 597 36 HOH HOH . E 5 HOH A 98 598 144 HOH HOH . E 5 HOH A 99 599 65 HOH HOH . E 5 HOH A 100 600 48 HOH HOH . E 5 HOH A 101 601 101 HOH HOH . E 5 HOH A 102 602 106 HOH HOH . E 5 HOH A 103 603 28 HOH HOH . E 5 HOH A 104 604 179 HOH HOH . E 5 HOH A 105 605 57 HOH HOH . E 5 HOH A 106 606 21 HOH HOH . E 5 HOH A 107 607 117 HOH HOH . E 5 HOH A 108 608 75 HOH HOH . E 5 HOH A 109 609 44 HOH HOH . E 5 HOH A 110 610 41 HOH HOH . E 5 HOH A 111 611 98 HOH HOH . E 5 HOH A 112 612 38 HOH HOH . E 5 HOH A 113 613 62 HOH HOH . E 5 HOH A 114 614 133 HOH HOH . E 5 HOH A 115 615 102 HOH HOH . E 5 HOH A 116 616 72 HOH HOH . E 5 HOH A 117 617 74 HOH HOH . E 5 HOH A 118 618 17 HOH HOH . E 5 HOH A 119 619 161 HOH HOH . E 5 HOH A 120 620 59 HOH HOH . E 5 HOH A 121 621 29 HOH HOH . E 5 HOH A 122 622 135 HOH HOH . E 5 HOH A 123 623 69 HOH HOH . E 5 HOH A 124 624 166 HOH HOH . E 5 HOH A 125 625 129 HOH HOH . E 5 HOH A 126 626 39 HOH HOH . E 5 HOH A 127 627 107 HOH HOH . E 5 HOH A 128 628 54 HOH HOH . E 5 HOH A 129 629 120 HOH HOH . E 5 HOH A 130 630 121 HOH HOH . E 5 HOH A 131 631 148 HOH HOH . E 5 HOH A 132 632 125 HOH HOH . E 5 HOH A 133 633 97 HOH HOH . E 5 HOH A 134 634 68 HOH HOH . E 5 HOH A 135 635 131 HOH HOH . E 5 HOH A 136 636 47 HOH HOH . E 5 HOH A 137 637 159 HOH HOH . E 5 HOH A 138 638 45 HOH HOH . E 5 HOH A 139 639 80 HOH HOH . E 5 HOH A 140 640 70 HOH HOH . E 5 HOH A 141 641 183 HOH HOH . E 5 HOH A 142 642 33 HOH HOH . E 5 HOH A 143 643 174 HOH HOH . E 5 HOH A 144 644 58 HOH HOH . E 5 HOH A 145 645 164 HOH HOH . E 5 HOH A 146 646 152 HOH HOH . E 5 HOH A 147 647 37 HOH HOH . E 5 HOH A 148 648 113 HOH HOH . E 5 HOH A 149 649 126 HOH HOH . E 5 HOH A 150 650 190 HOH HOH . E 5 HOH A 151 651 167 HOH HOH . E 5 HOH A 152 652 186 HOH HOH . E 5 HOH A 153 653 188 HOH HOH . E 5 HOH A 154 654 173 HOH HOH . E 5 HOH A 155 655 90 HOH HOH . E 5 HOH A 156 656 139 HOH HOH . E 5 HOH A 157 657 178 HOH HOH . E 5 HOH A 158 658 66 HOH HOH . E 5 HOH A 159 659 180 HOH HOH . E 5 HOH A 160 660 108 HOH HOH . E 5 HOH A 161 661 145 HOH HOH . E 5 HOH A 162 662 95 HOH HOH . E 5 HOH A 163 663 189 HOH HOH . E 5 HOH A 164 664 137 HOH HOH . E 5 HOH A 165 665 114 HOH HOH . E 5 HOH A 166 666 151 HOH HOH . E 5 HOH A 167 667 138 HOH HOH . E 5 HOH A 168 668 115 HOH HOH . E 5 HOH A 169 669 163 HOH HOH . E 5 HOH A 170 670 76 HOH HOH . E 5 HOH A 171 671 176 HOH HOH . E 5 HOH A 172 672 118 HOH HOH . E 5 HOH A 173 673 147 HOH HOH . E 5 HOH A 174 674 140 HOH HOH . E 5 HOH A 175 675 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP1 P1T . . . C 3 -25.148 20.121 -5.691 1 16.45 -1 OP1 P1T 402 A 1 HETATM 2 P P P1T . . . C 3 -24.394 18.784 -5.742 1 16.81 ? P P1T 402 A 1 HETATM 3 O OP2 P1T . . . C 3 -24.009 18.449 -7.163 1 17.22 -1 OP2 P1T 402 A 1 HETATM 4 O OP3 P1T . . . C 3 -23.242 18.765 -4.771 1 15.73 ? OP3 P1T 402 A 1 HETATM 5 O OP4 P1T . . . C 3 -25.445 17.668 -5.294 1 20.29 ? OP4 P1T 402 A 1 HETATM 6 C C5A P1T . . . C 3 -26.142 17.887 -4.041 1 20.36 ? C5A P1T 402 A 1 HETATM 7 C C5 P1T . . . C 3 -26.558 16.542 -3.433 1 19.95 ? C5 P1T 402 A 1 HETATM 8 C C6 P1T . . . C 3 -27.887 16.183 -3.524 1 19.7 ? C6 P1T 402 A 1 HETATM 9 N N1 P1T . . . C 3 -28.353 14.994 -2.985 1 19.71 ? N1 P1T 402 A 1 HETATM 10 C C2 P1T . . . C 3 -27.506 14.138 -2.366 1 19.67 ? C2 P1T 402 A 1 HETATM 11 C C2A P1T . . . C 3 -28.056 12.818 -1.807 1 19.74 ? C2A P1T 402 A 1 HETATM 12 C C3 P1T . . . C 3 -26.14 14.466 -2.284 1 19.61 ? C3 P1T 402 A 1 HETATM 13 O O3A P1T . . . C 3 -25.327 13.53 -1.656 1 19.71 ? O3A P1T 402 A 1 HETATM 14 C C4 P1T . . . C 3 -25.664 15.682 -2.795 1 19.5 ? C4 P1T 402 A 1 HETATM 15 C C4A P1T . . . C 3 -24.195 16.084 -2.696 1 19.51 ? C4A P1T 402 A 1 HETATM 16 N N P1T . . . C 3 -23.477 15.586 -1.709 1 19.9 ? N P1T 402 A 1 HETATM 17 C CA P1T . . . C 3 -22.12 15.982 -1.426 1 19.71 ? CA P1T 402 A 1 HETATM 18 C CB P1T . . . C 3 -21.724 17.288 -1.25 1 19.17 ? CB P1T 402 A 1 HETATM 19 C C P1T . . . C 3 -21.194 14.855 -0.985 1 19.29 ? C P1T 402 A 1 HETATM 20 O O P1T . . . C 3 -20.156 15.109 -0.256 1 18.86 -1 O P1T 402 A 1 HETATM 21 O OXT P1T . . . C 3 -21.527 13.678 -1.366 1 19 ? OXT P1T 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #