data_5D88 # _model_server_result.job_id kP4JKuxzYV3lABMn2yS3rQ _model_server_result.datetime_utc '2024-11-04 22:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5D88 # _exptl.entry_id 5D88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D88 _cell.length_a 79.15 _cell.length_b 79.15 _cell.length_c 89.158 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 59.438667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 88 A CYS 68 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A SG CYS 88 A CYS 68 1_555 B ZN ZN . A ZN 301 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A NE2 HIS 209 A HIS 189 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A NE2 HIS 209 A HIS 189 1_555 B ZN ZN . A ZN 301 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5D88 _atom_sites.fract_transf_matrix[1][1] 0.012634 _atom_sites.fract_transf_matrix[1][2] 0.007294 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN Zn . C 3 ACT A 1 302 1 ACT ACT . D 4 HOH A 1 401 139 HOH HOH . D 4 HOH A 2 402 147 HOH HOH . D 4 HOH A 3 403 54 HOH HOH . D 4 HOH A 4 404 113 HOH HOH . D 4 HOH A 5 405 23 HOH HOH . D 4 HOH A 6 406 103 HOH HOH . D 4 HOH A 7 407 116 HOH HOH . D 4 HOH A 8 408 148 HOH HOH . D 4 HOH A 9 409 48 HOH HOH . D 4 HOH A 10 410 47 HOH HOH . D 4 HOH A 11 411 75 HOH HOH . D 4 HOH A 12 412 149 HOH HOH . D 4 HOH A 13 413 96 HOH HOH . D 4 HOH A 14 414 52 HOH HOH . D 4 HOH A 15 415 13 HOH HOH . D 4 HOH A 16 416 18 HOH HOH . D 4 HOH A 17 417 91 HOH HOH . D 4 HOH A 18 418 72 HOH HOH . D 4 HOH A 19 419 109 HOH HOH . D 4 HOH A 20 420 81 HOH HOH . D 4 HOH A 21 421 3 HOH HOH . D 4 HOH A 22 422 67 HOH HOH . D 4 HOH A 23 423 63 HOH HOH . D 4 HOH A 24 424 32 HOH HOH . D 4 HOH A 25 425 19 HOH HOH . D 4 HOH A 26 426 128 HOH HOH . D 4 HOH A 27 427 98 HOH HOH . D 4 HOH A 28 428 150 HOH HOH . D 4 HOH A 29 429 69 HOH HOH . D 4 HOH A 30 430 46 HOH HOH . D 4 HOH A 31 431 36 HOH HOH . D 4 HOH A 32 432 90 HOH HOH . D 4 HOH A 33 433 105 HOH HOH . D 4 HOH A 34 434 45 HOH HOH . D 4 HOH A 35 435 41 HOH HOH . D 4 HOH A 36 436 22 HOH HOH . D 4 HOH A 37 437 95 HOH HOH . D 4 HOH A 38 438 6 HOH HOH . D 4 HOH A 39 439 86 HOH HOH . D 4 HOH A 40 440 53 HOH HOH . D 4 HOH A 41 441 114 HOH HOH . D 4 HOH A 42 442 39 HOH HOH . D 4 HOH A 43 443 55 HOH HOH . D 4 HOH A 44 444 2 HOH HOH . D 4 HOH A 45 445 15 HOH HOH . D 4 HOH A 46 446 118 HOH HOH . D 4 HOH A 47 447 110 HOH HOH . D 4 HOH A 48 448 77 HOH HOH . D 4 HOH A 49 449 157 HOH HOH . D 4 HOH A 50 450 138 HOH HOH . D 4 HOH A 51 451 130 HOH HOH . D 4 HOH A 52 452 7 HOH HOH . D 4 HOH A 53 453 87 HOH HOH . D 4 HOH A 54 454 1 HOH HOH . D 4 HOH A 55 455 137 HOH HOH . D 4 HOH A 56 456 80 HOH HOH . D 4 HOH A 57 457 5 HOH HOH . D 4 HOH A 58 458 51 HOH HOH . D 4 HOH A 59 459 43 HOH HOH . D 4 HOH A 60 460 38 HOH HOH . D 4 HOH A 61 461 120 HOH HOH . D 4 HOH A 62 462 82 HOH HOH . D 4 HOH A 63 463 25 HOH HOH . D 4 HOH A 64 464 56 HOH HOH . D 4 HOH A 65 465 57 HOH HOH . D 4 HOH A 66 466 122 HOH HOH . D 4 HOH A 67 467 11 HOH HOH . D 4 HOH A 68 468 40 HOH HOH . D 4 HOH A 69 469 135 HOH HOH . D 4 HOH A 70 470 83 HOH HOH . D 4 HOH A 71 471 4 HOH HOH . D 4 HOH A 72 472 92 HOH HOH . D 4 HOH A 73 473 33 HOH HOH . D 4 HOH A 74 474 112 HOH HOH . D 4 HOH A 75 475 119 HOH HOH . D 4 HOH A 76 476 89 HOH HOH . D 4 HOH A 77 477 141 HOH HOH . D 4 HOH A 78 478 8 HOH HOH . D 4 HOH A 79 479 10 HOH HOH . D 4 HOH A 80 480 124 HOH HOH . D 4 HOH A 81 481 97 HOH HOH . D 4 HOH A 82 482 88 HOH HOH . D 4 HOH A 83 483 50 HOH HOH . D 4 HOH A 84 484 59 HOH HOH . D 4 HOH A 85 485 108 HOH HOH . D 4 HOH A 86 486 100 HOH HOH . D 4 HOH A 87 487 73 HOH HOH . D 4 HOH A 88 488 99 HOH HOH . D 4 HOH A 89 489 117 HOH HOH . D 4 HOH A 90 490 31 HOH HOH . D 4 HOH A 91 491 44 HOH HOH . D 4 HOH A 92 492 28 HOH HOH . D 4 HOH A 93 493 101 HOH HOH . D 4 HOH A 94 494 68 HOH HOH . D 4 HOH A 95 495 26 HOH HOH . D 4 HOH A 96 496 65 HOH HOH . D 4 HOH A 97 497 104 HOH HOH . D 4 HOH A 98 498 9 HOH HOH . D 4 HOH A 99 499 49 HOH HOH . D 4 HOH A 100 500 66 HOH HOH . D 4 HOH A 101 501 27 HOH HOH . D 4 HOH A 102 502 115 HOH HOH . D 4 HOH A 103 503 111 HOH HOH . D 4 HOH A 104 504 136 HOH HOH . D 4 HOH A 105 505 30 HOH HOH . D 4 HOH A 106 506 14 HOH HOH . D 4 HOH A 107 507 20 HOH HOH . D 4 HOH A 108 508 70 HOH HOH . D 4 HOH A 109 509 34 HOH HOH . D 4 HOH A 110 510 12 HOH HOH . D 4 HOH A 111 511 151 HOH HOH . D 4 HOH A 112 512 84 HOH HOH . D 4 HOH A 113 513 79 HOH HOH . D 4 HOH A 114 514 24 HOH HOH . D 4 HOH A 115 515 16 HOH HOH . D 4 HOH A 116 516 64 HOH HOH . D 4 HOH A 117 517 155 HOH HOH . D 4 HOH A 118 518 37 HOH HOH . D 4 HOH A 119 519 76 HOH HOH . D 4 HOH A 120 520 35 HOH HOH . D 4 HOH A 121 521 61 HOH HOH . D 4 HOH A 122 522 74 HOH HOH . D 4 HOH A 123 523 62 HOH HOH . D 4 HOH A 124 524 158 HOH HOH . D 4 HOH A 125 525 154 HOH HOH . D 4 HOH A 126 526 131 HOH HOH . D 4 HOH A 127 527 42 HOH HOH . D 4 HOH A 128 528 60 HOH HOH . D 4 HOH A 129 529 21 HOH HOH . D 4 HOH A 130 530 17 HOH HOH . D 4 HOH A 131 531 156 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 145 HOH HOH . D 4 HOH A 134 534 125 HOH HOH . D 4 HOH A 135 535 102 HOH HOH . D 4 HOH A 136 536 161 HOH HOH . D 4 HOH A 137 537 93 HOH HOH . D 4 HOH A 138 538 121 HOH HOH . D 4 HOH A 139 539 160 HOH HOH . D 4 HOH A 140 540 106 HOH HOH . D 4 HOH A 141 541 94 HOH HOH . D 4 HOH A 142 542 143 HOH HOH . D 4 HOH A 143 543 142 HOH HOH . D 4 HOH A 144 544 152 HOH HOH . D 4 HOH A 145 545 146 HOH HOH . D 4 HOH A 146 546 159 HOH HOH . D 4 HOH A 147 547 85 HOH HOH . D 4 HOH A 148 548 133 HOH HOH . D 4 HOH A 149 549 107 HOH HOH . D 4 HOH A 150 550 140 HOH HOH . D 4 HOH A 151 551 126 HOH HOH . D 4 HOH A 152 552 127 HOH HOH . D 4 HOH A 153 553 29 HOH HOH . D 4 HOH A 154 554 71 HOH HOH . D 4 HOH A 155 555 134 HOH HOH . D 4 HOH A 156 556 78 HOH HOH . D 4 HOH A 157 557 129 HOH HOH . D 4 HOH A 158 558 153 HOH HOH . D 4 HOH A 159 559 123 HOH HOH . D 4 HOH A 160 560 144 HOH HOH . D 4 HOH A 161 561 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 9.711 -33.47 19.569 1 29.69 ? C ACT 302 A 1 HETATM 2 O O ACT . . . C 3 9.656 -32.22 19.663 1 28.53 ? O ACT 302 A 1 HETATM 3 O OXT ACT . . . C 3 10.62 -34.035 20.22 1 30.11 ? OXT ACT 302 A 1 HETATM 4 C CH3 ACT . . . C 3 8.719 -34.246 18.747 1 29.97 ? CH3 ACT 302 A 1 HETATM 5 H H1 ACT . . . C 3 8.007 -33.558 18.291 1 35.97 ? H1 ACT 302 A 1 HETATM 6 H H2 ACT . . . C 3 9.245 -34.795 17.966 1 35.97 ? H2 ACT 302 A 1 HETATM 7 H H3 ACT . . . C 3 8.186 -34.948 19.389 1 35.97 ? H3 ACT 302 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #