data_5D8U # _model_server_result.job_id GOesj9SwnzGWI7OsasPSsg _model_server_result.datetime_utc '2024-11-15 02:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5D8U # _exptl.entry_id 5D8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.894 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D8U _cell.length_a 89.881 _cell.length_b 89.881 _cell.length_c 134.148 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 A OD1 ASP 120 A ASP 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O28 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O26 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O27 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O28 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 C MN MN . A MN 202 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc12 C MN MN . A MN 202 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C23 H24 Cl N O4' _chem_comp.formula_weight 413.894 _chem_comp.id 0N8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 0N8 doub 1 n y C6 C5 0N8 sing 2 n y C1 C2 0N8 sing 3 n y O27 C14 0N8 doub 4 n n C12 C13 0N8 sing 5 n n C12 C11 0N8 sing 6 n n C5 C4 0N8 doub 7 n y C13 N8 0N8 sing 8 n n C2 C7 0N8 sing 9 n n C2 C3 0N8 doub 10 n y O28 C23 0N8 sing 11 n n C7 N8 0N8 sing 12 n n C15 C11 0N8 sing 13 n n C15 C16 0N8 sing 14 n n C14 C11 0N8 sing 15 n n C14 C22 0N8 sing 16 n n C11 C10 0N8 sing 17 n n N8 C9 0N8 sing 18 n n C4 C3 0N8 sing 19 n y C16 C21 0N8 doub 20 n y C16 C17 0N8 sing 21 n y C23 C22 0N8 doub 22 z n C23 C24 0N8 sing 23 n n C21 C20 0N8 sing 24 n y C17 C18 0N8 doub 25 n y O25 C24 0N8 doub 26 n n C10 C9 0N8 sing 27 n n C24 O26 0N8 sing 28 n n C20 C19 0N8 doub 29 n y C18 C19 0N8 sing 30 n y C19 CL2 0N8 sing 31 n n C18 H1 0N8 sing 32 n n C17 H2 0N8 sing 33 n n C20 H3 0N8 sing 34 n n C21 H4 0N8 sing 35 n n C15 H5 0N8 sing 36 n n C15 H6 0N8 sing 37 n n C10 H7 0N8 sing 38 n n C10 H8 0N8 sing 39 n n C9 H9 0N8 sing 40 n n C9 H10 0N8 sing 41 n n C22 H11 0N8 sing 42 n n O28 H14 0N8 sing 43 n n O26 H15 0N8 sing 44 n n C12 H16 0N8 sing 45 n n C12 H17 0N8 sing 46 n n C13 H18 0N8 sing 47 n n C13 H19 0N8 sing 48 n n C7 H21 0N8 sing 49 n n C7 H22 0N8 sing 50 n n C3 H23 0N8 sing 51 n n C4 H24 0N8 sing 52 n n C5 H25 0N8 sing 53 n n C6 H26 0N8 sing 54 n n C1 H27 0N8 sing 55 n n # _atom_sites.entry_id 5D8U _atom_sites.fract_transf_matrix[1][1] 0.011126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 0N8 A 1 203 1 0N8 0N8 . E 4 HOH A 1 301 13 HOH HOH . E 4 HOH A 2 302 14 HOH HOH . E 4 HOH A 3 303 6 HOH HOH . E 4 HOH A 4 304 23 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 21 HOH HOH . E 4 HOH A 7 307 10 HOH HOH . E 4 HOH A 8 308 16 HOH HOH . E 4 HOH A 9 309 26 HOH HOH . E 4 HOH A 10 310 20 HOH HOH . E 4 HOH A 11 311 4 HOH HOH . E 4 HOH A 12 312 3 HOH HOH . E 4 HOH A 13 313 30 HOH HOH . E 4 HOH A 14 314 11 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 18 HOH HOH . E 4 HOH A 17 317 31 HOH HOH . E 4 HOH A 18 318 27 HOH HOH . E 4 HOH A 19 319 1 HOH HOH . E 4 HOH A 20 320 25 HOH HOH . E 4 HOH A 21 321 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 0N8 . . . D 3 3.148 -55.62 425.076 1 107.71 ? CL2 0N8 203 A 1 HETATM 2 C C19 0N8 . . . D 3 2.458 -56.212 423.526 1 102.15 ? C19 0N8 203 A 1 HETATM 3 C C18 0N8 . . . D 3 2.03 -57.521 423.372 1 93.34 ? C18 0N8 203 A 1 HETATM 4 C C17 0N8 . . . D 3 1.489 -57.972 422.161 1 99.42 ? C17 0N8 203 A 1 HETATM 5 C C20 0N8 . . . D 3 2.324 -55.381 422.409 1 100.62 ? C20 0N8 203 A 1 HETATM 6 C C21 0N8 . . . D 3 1.79 -55.828 421.188 1 98.94 ? C21 0N8 203 A 1 HETATM 7 C C16 0N8 . . . D 3 1.362 -57.132 421.049 1 97.81 ? C16 0N8 203 A 1 HETATM 8 C C15 0N8 . . . D 3 0.747 -57.594 419.711 1 94.07 ? C15 0N8 203 A 1 HETATM 9 C C11 0N8 . . . D 3 1.818 -57.978 418.697 1 91.32 ? C11 0N8 203 A 1 HETATM 10 C C10 0N8 . . . D 3 1.145 -58.106 417.342 1 87.09 ? C10 0N8 203 A 1 HETATM 11 C C9 0N8 . . . D 3 2.09 -58.53 416.238 1 92.11 ? C9 0N8 203 A 1 HETATM 12 C C14 0N8 . . . D 3 2.402 -59.306 419.314 1 81.34 ? C14 0N8 203 A 1 HETATM 13 O O27 0N8 . . . D 3 1.654 -60.247 419.374 1 80.45 ? O27 0N8 203 A 1 HETATM 14 C C22 0N8 . . . D 3 3.853 -59.416 419.843 1 70.72 ? C22 0N8 203 A 1 HETATM 15 C C23 0N8 . . . D 3 4.38 -60.366 420.645 1 68.02 ? C23 0N8 203 A 1 HETATM 16 O O28 0N8 . . . D 3 3.675 -61.433 421.168 1 62.11 ? O28 0N8 203 A 1 HETATM 17 C C24 0N8 . . . D 3 5.818 -60.276 421.165 1 67.84 ? C24 0N8 203 A 1 HETATM 18 O O26 0N8 . . . D 3 6.173 -61.103 422.026 1 61.89 ? O26 0N8 203 A 1 HETATM 19 O O25 0N8 . . . D 3 6.664 -59.419 420.755 1 68.69 -1 O25 0N8 203 A 1 HETATM 20 C C12 0N8 . . . D 3 2.928 -56.889 418.358 1 88.91 ? C12 0N8 203 A 1 HETATM 21 C C13 0N8 . . . D 3 3.867 -57.432 417.201 1 92.9 ? C13 0N8 203 A 1 HETATM 22 N N8 0N8 . . . D 3 3.156 -57.706 416.003 1 95.27 ? N8 0N8 203 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #