data_5D91 # _model_server_result.job_id DM6C8xlzzZ8qnavMtt_m2Q _model_server_result.datetime_utc '2024-11-05 00:58:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":316}' # _entry.id 5D91 # _exptl.entry_id 5D91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.494 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Octadecane _entity.pdbx_number_of_molecules 35 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D91 _cell.length_a 48.632 _cell.length_b 94.069 _cell.length_c 103.916 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 197 A ASP 66 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OD1 ASP 218 A ASP 87 1_555 H MG MG . A MG 307 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A OD2 ASP 222 A ASP 91 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C18 H38' _chem_comp.formula_weight 254.494 _chem_comp.id 8K6 _chem_comp.mon_nstd_flag . _chem_comp.name Octadecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-Octadecane # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 8K6 sing 1 n n C2 C3 8K6 sing 2 n n C3 C4 8K6 sing 3 n n C4 C5 8K6 sing 4 n n C5 C6 8K6 sing 5 n n C6 C7 8K6 sing 6 n n C7 C8 8K6 sing 7 n n C8 C9 8K6 sing 8 n n C9 C10 8K6 sing 9 n n C10 C11 8K6 sing 10 n n C11 C12 8K6 sing 11 n n C12 C13 8K6 sing 12 n n C13 C14 8K6 sing 13 n n C14 C15 8K6 sing 14 n n C15 C16 8K6 sing 15 n n C16 C17 8K6 sing 16 n n C17 C18 8K6 sing 17 n n C1 H11C 8K6 sing 18 n n C1 H12C 8K6 sing 19 n n C1 H13C 8K6 sing 20 n n C2 H21C 8K6 sing 21 n n C2 H22C 8K6 sing 22 n n C3 H31C 8K6 sing 23 n n C3 H32C 8K6 sing 24 n n C4 H41C 8K6 sing 25 n n C4 H42C 8K6 sing 26 n n C5 H51C 8K6 sing 27 n n C5 H52C 8K6 sing 28 n n C6 H61C 8K6 sing 29 n n C6 H62C 8K6 sing 30 n n C7 H71C 8K6 sing 31 n n C7 H72C 8K6 sing 32 n n C8 H81C 8K6 sing 33 n n C8 H82C 8K6 sing 34 n n C9 H91C 8K6 sing 35 n n C9 H92C 8K6 sing 36 n n C10 H101 8K6 sing 37 n n C10 H102 8K6 sing 38 n n C11 H111 8K6 sing 39 n n C11 H112 8K6 sing 40 n n C12 H121 8K6 sing 41 n n C12 H122 8K6 sing 42 n n C13 H131 8K6 sing 43 n n C13 H132 8K6 sing 44 n n C14 H141 8K6 sing 45 n n C14 H142 8K6 sing 46 n n C15 H151 8K6 sing 47 n n C15 H152 8K6 sing 48 n n C16 H161 8K6 sing 49 n n C16 H162 8K6 sing 50 n n C17 H171 8K6 sing 51 n n C17 H172 8K6 sing 52 n n C18 H181 8K6 sing 53 n n C18 H182 8K6 sing 54 n n C18 H183 8K6 sing 55 n n # _atom_sites.entry_id 5D91 _atom_sites.fract_transf_matrix[1][1] 0.020562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 205 SO4 SO4 . C 2 SO4 A 1 302 206 SO4 SO4 . D 3 8K6 A 1 303 210 8K6 HP6 . E 3 8K6 A 1 304 219 8K6 HP6 . F 3 8K6 A 1 305 220 8K6 HP6 . G 3 8K6 A 1 306 222 8K6 HP6 . H 4 MG A 1 307 227 MG MG . I 3 8K6 A 1 308 2 8K6 HP6 . J 3 8K6 A 1 309 3 8K6 HP6 . K 3 8K6 A 1 310 6 8K6 HP6 . L 3 8K6 A 1 311 7 8K6 HP6 . M 3 8K6 A 1 312 9 8K6 HP6 . N 3 8K6 A 1 313 11 8K6 HP6 . O 3 8K6 A 1 314 12 8K6 HP6 . P 3 8K6 A 1 315 13 8K6 HP6 . Q 3 8K6 A 1 316 14 8K6 HP6 . R 3 8K6 A 1 317 15 8K6 HP6 . S 3 8K6 A 1 318 16 8K6 HP6 . T 3 8K6 A 1 319 18 8K6 HP6 . U 3 8K6 A 1 320 19 8K6 HP6 . V 3 8K6 A 1 321 20 8K6 HP6 . W 3 8K6 A 1 322 21 8K6 HP6 . X 3 8K6 A 1 323 22 8K6 HP6 . Y 3 8K6 A 1 324 23 8K6 HP6 . Z 3 8K6 A 1 325 24 8K6 HP6 . AA 3 8K6 A 1 326 25 8K6 HP6 . BA 3 8K6 A 1 327 26 8K6 HP6 . CA 3 8K6 A 1 328 27 8K6 HP6 . DA 2 SO4 A 1 329 1 SO4 SO4 . EA 2 SO4 A 1 330 2 SO4 SO4 . FA 3 8K6 A 1 331 2 8K6 D12 . GA 3 8K6 A 1 332 3 8K6 D12 . HA 3 8K6 A 1 333 1 8K6 OCT . IA 3 8K6 A 1 334 1 8K6 R16 . JA 3 8K6 A 1 335 2 8K6 R16 . KA 3 8K6 A 1 336 1 8K6 D10 . LA 3 8K6 A 1 337 2 8K6 D10 . MA 3 8K6 A 1 338 1 8K6 UND . NA 3 8K6 A 1 339 2 8K6 UND . OA 3 8K6 A 1 340 3 8K6 UND . PA 5 HOH A 1 401 16 HOH HOH . PA 5 HOH A 2 402 20 HOH HOH . PA 5 HOH A 3 403 9 HOH HOH . PA 5 HOH A 4 404 14 HOH HOH . PA 5 HOH A 5 405 12 HOH HOH . PA 5 HOH A 6 406 5 HOH HOH . PA 5 HOH A 7 407 21 HOH HOH . PA 5 HOH A 8 408 13 HOH HOH . PA 5 HOH A 9 409 10 HOH HOH . PA 5 HOH A 10 410 18 HOH HOH . PA 5 HOH A 11 411 19 HOH HOH . PA 5 HOH A 12 412 32 HOH HOH . PA 5 HOH A 13 413 3 HOH HOH . PA 5 HOH A 14 414 34 HOH HOH . PA 5 HOH A 15 415 31 HOH HOH . PA 5 HOH A 16 416 4 HOH HOH . PA 5 HOH A 17 417 27 HOH HOH . PA 5 HOH A 18 418 15 HOH HOH . PA 5 HOH A 19 419 2 HOH HOH . PA 5 HOH A 20 420 7 HOH HOH . PA 5 HOH A 21 421 17 HOH HOH . PA 5 HOH A 22 422 23 HOH HOH . PA 5 HOH A 23 423 1 HOH HOH . PA 5 HOH A 24 424 29 HOH HOH . PA 5 HOH A 25 425 8 HOH HOH . PA 5 HOH A 26 426 6 HOH HOH . PA 5 HOH A 27 427 11 HOH HOH . PA 5 HOH A 28 428 30 HOH HOH . PA 5 HOH A 29 429 25 HOH HOH . PA 5 HOH A 30 430 26 HOH HOH . PA 5 HOH A 31 431 33 HOH HOH . PA 5 HOH A 32 432 28 HOH HOH . PA 5 HOH A 33 433 24 HOH HOH . PA 5 HOH A 34 434 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 8K6 . . . Q 3 -44.818 31.322 44.867 1 65.93 ? C11 8K6 316 A 1 HETATM 2 C C12 8K6 . . . Q 3 -44.591 32.273 43.684 1 70.59 ? C12 8K6 316 A 1 HETATM 3 C C13 8K6 . . . Q 3 -45.644 32.033 42.593 1 74.62 ? C13 8K6 316 A 1 HETATM 4 C C14 8K6 . . . Q 3 -45.469 32.972 41.391 1 75.12 ? C14 8K6 316 A 1 HETATM 5 C C15 8K6 . . . Q 3 -46.407 32.544 40.252 1 76.6 ? C15 8K6 316 A 1 HETATM 6 C C16 8K6 . . . Q 3 -46.166 33.399 38.999 1 79.21 ? C16 8K6 316 A 1 HETATM 7 C C17 8K6 . . . Q 3 -46.779 32.755 37.746 1 77.85 ? C17 8K6 316 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #