data_5D9F # _model_server_result.job_id iOmISqwbCqA9HTgDndfT-w _model_server_result.datetime_utc '2024-10-19 20:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5D9F # _exptl.entry_id 5D9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 281.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1R,3S)-3-phenylcyclopentyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D9F _cell.length_a 94.784 _cell.length_b 94.784 _cell.length_c 178.164 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 N3 O' _chem_comp.formula_weight 281.352 _chem_comp.id 58G _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1R,3S)-3-phenylcyclopentyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 58G doub 1 n y C19 C14 58G sing 2 n y C18 C17 58G sing 3 n y C12 C14 58G sing 4 n n C12 C11 58G sing 5 n n C12 C13 58G sing 6 n n C14 C15 58G doub 7 n y C17 C16 58G doub 8 n y C11 C10 58G sing 9 n n C15 C16 58G sing 10 n y C13 C9 58G sing 11 n n C10 C9 58G sing 12 n n C9 N8 58G sing 13 n n N8 C7 58G sing 14 n n N20 C7 58G doub 15 n y N20 C21 58G sing 16 n y C7 C6 58G sing 17 n y C21 C4 58G doub 18 n y C6 C5 58G doub 19 n y C4 C5 58G sing 20 n y C4 C2 58G sing 21 n n O3 C2 58G doub 22 n n C2 N1 58G sing 23 n n C17 H1 58G sing 24 n n C16 H2 58G sing 25 n n C18 H3 58G sing 26 n n C5 H4 58G sing 27 n n C15 H5 58G sing 28 n n C19 H6 58G sing 29 n n C6 H7 58G sing 30 n n C21 H8 58G sing 31 n n C11 H9 58G sing 32 n n C11 H10 58G sing 33 n n C10 H11 58G sing 34 n n C10 H12 58G sing 35 n n C13 H13 58G sing 36 n n C13 H14 58G sing 37 n n C12 H15 58G sing 38 n n C9 H16 58G sing 39 n n N1 H17 58G sing 40 n n N1 H18 58G sing 41 n n N8 H19 58G sing 42 n n # _atom_sites.entry_id 5D9F _atom_sites.fract_transf_matrix[1][1] 0.01055 _atom_sites.fract_transf_matrix[1][2] 0.006091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 58G A 1 301 1 58G UNL . C 3 HOH A 1 401 126 HOH HOH . C 3 HOH A 2 402 117 HOH HOH . C 3 HOH A 3 403 18 HOH HOH . C 3 HOH A 4 404 94 HOH HOH . C 3 HOH A 5 405 77 HOH HOH . C 3 HOH A 6 406 45 HOH HOH . C 3 HOH A 7 407 131 HOH HOH . C 3 HOH A 8 408 100 HOH HOH . C 3 HOH A 9 409 50 HOH HOH . C 3 HOH A 10 410 46 HOH HOH . C 3 HOH A 11 411 31 HOH HOH . C 3 HOH A 12 412 109 HOH HOH . C 3 HOH A 13 413 4 HOH HOH . C 3 HOH A 14 414 12 HOH HOH . C 3 HOH A 15 415 61 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 116 HOH HOH . C 3 HOH A 18 418 102 HOH HOH . C 3 HOH A 19 419 85 HOH HOH . C 3 HOH A 20 420 95 HOH HOH . C 3 HOH A 21 421 44 HOH HOH . C 3 HOH A 22 422 39 HOH HOH . C 3 HOH A 23 423 20 HOH HOH . C 3 HOH A 24 424 71 HOH HOH . C 3 HOH A 25 425 5 HOH HOH . C 3 HOH A 26 426 32 HOH HOH . C 3 HOH A 27 427 16 HOH HOH . C 3 HOH A 28 428 47 HOH HOH . C 3 HOH A 29 429 67 HOH HOH . C 3 HOH A 30 430 35 HOH HOH . C 3 HOH A 31 431 30 HOH HOH . C 3 HOH A 32 432 80 HOH HOH . C 3 HOH A 33 433 34 HOH HOH . C 3 HOH A 34 434 11 HOH HOH . C 3 HOH A 35 435 124 HOH HOH . C 3 HOH A 36 436 98 HOH HOH . C 3 HOH A 37 437 13 HOH HOH . C 3 HOH A 38 438 19 HOH HOH . C 3 HOH A 39 439 36 HOH HOH . C 3 HOH A 40 440 2 HOH HOH . C 3 HOH A 41 441 72 HOH HOH . C 3 HOH A 42 442 132 HOH HOH . C 3 HOH A 43 443 40 HOH HOH . C 3 HOH A 44 444 97 HOH HOH . C 3 HOH A 45 445 9 HOH HOH . C 3 HOH A 46 446 27 HOH HOH . C 3 HOH A 47 447 7 HOH HOH . C 3 HOH A 48 448 37 HOH HOH . C 3 HOH A 49 449 29 HOH HOH . C 3 HOH A 50 450 110 HOH HOH . C 3 HOH A 51 451 58 HOH HOH . C 3 HOH A 52 452 70 HOH HOH . C 3 HOH A 53 453 101 HOH HOH . C 3 HOH A 54 454 66 HOH HOH . C 3 HOH A 55 455 88 HOH HOH . C 3 HOH A 56 456 43 HOH HOH . C 3 HOH A 57 457 3 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 6 HOH HOH . C 3 HOH A 60 460 68 HOH HOH . C 3 HOH A 61 461 60 HOH HOH . C 3 HOH A 62 462 118 HOH HOH . C 3 HOH A 63 463 8 HOH HOH . C 3 HOH A 64 464 23 HOH HOH . C 3 HOH A 65 465 63 HOH HOH . C 3 HOH A 66 466 59 HOH HOH . C 3 HOH A 67 467 28 HOH HOH . C 3 HOH A 68 468 15 HOH HOH . C 3 HOH A 69 469 26 HOH HOH . C 3 HOH A 70 470 38 HOH HOH . C 3 HOH A 71 471 115 HOH HOH . C 3 HOH A 72 472 79 HOH HOH . C 3 HOH A 73 473 89 HOH HOH . C 3 HOH A 74 474 123 HOH HOH . C 3 HOH A 75 475 84 HOH HOH . C 3 HOH A 76 476 99 HOH HOH . C 3 HOH A 77 477 48 HOH HOH . C 3 HOH A 78 478 125 HOH HOH . C 3 HOH A 79 479 24 HOH HOH . C 3 HOH A 80 480 10 HOH HOH . C 3 HOH A 81 481 56 HOH HOH . C 3 HOH A 82 482 121 HOH HOH . C 3 HOH A 83 483 25 HOH HOH . C 3 HOH A 84 484 17 HOH HOH . C 3 HOH A 85 485 73 HOH HOH . C 3 HOH A 86 486 21 HOH HOH . C 3 HOH A 87 487 14 HOH HOH . C 3 HOH A 88 488 22 HOH HOH . C 3 HOH A 89 489 92 HOH HOH . C 3 HOH A 90 490 103 HOH HOH . C 3 HOH A 91 491 114 HOH HOH . C 3 HOH A 92 492 33 HOH HOH . C 3 HOH A 93 493 65 HOH HOH . C 3 HOH A 94 494 93 HOH HOH . C 3 HOH A 95 495 119 HOH HOH . C 3 HOH A 96 496 52 HOH HOH . C 3 HOH A 97 497 127 HOH HOH . C 3 HOH A 98 498 87 HOH HOH . C 3 HOH A 99 499 86 HOH HOH . C 3 HOH A 100 500 53 HOH HOH . C 3 HOH A 101 501 113 HOH HOH . C 3 HOH A 102 502 91 HOH HOH . C 3 HOH A 103 503 107 HOH HOH . C 3 HOH A 104 504 104 HOH HOH . C 3 HOH A 105 505 106 HOH HOH . C 3 HOH A 106 506 129 HOH HOH . C 3 HOH A 107 507 75 HOH HOH . C 3 HOH A 108 508 41 HOH HOH . C 3 HOH A 109 509 42 HOH HOH . C 3 HOH A 110 510 62 HOH HOH . C 3 HOH A 111 511 134 HOH HOH . C 3 HOH A 112 512 64 HOH HOH . C 3 HOH A 113 513 76 HOH HOH . C 3 HOH A 114 514 122 HOH HOH . C 3 HOH A 115 515 83 HOH HOH . C 3 HOH A 116 516 69 HOH HOH . C 3 HOH A 117 517 51 HOH HOH . C 3 HOH A 118 518 90 HOH HOH . C 3 HOH A 119 519 82 HOH HOH . C 3 HOH A 120 520 135 HOH HOH . C 3 HOH A 121 521 54 HOH HOH . C 3 HOH A 122 522 81 HOH HOH . C 3 HOH A 123 523 55 HOH HOH . C 3 HOH A 124 524 74 HOH HOH . C 3 HOH A 125 525 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 58G . . . B 2 -18.244 45.316 -12.721 1 38.13 ? C17 58G 301 A 1 HETATM 2 C C16 58G . . . B 2 -17.314 44.652 -11.965 1 35.54 ? C16 58G 301 A 1 HETATM 3 C C18 58G . . . B 2 -19.112 44.619 -13.526 1 38.3 ? C18 58G 301 A 1 HETATM 4 C C5 58G . . . B 2 -19.887 42.328 -7.089 1 23.53 ? C5 58G 301 A 1 HETATM 5 C C15 58G . . . B 2 -17.252 43.282 -12.019 1 36.65 ? C15 58G 301 A 1 HETATM 6 C C19 58G . . . B 2 -19.046 43.249 -13.572 1 33.51 ? C19 58G 301 A 1 HETATM 7 C C6 58G . . . B 2 -18.828 41.973 -7.883 1 22.19 ? C6 58G 301 A 1 HETATM 8 C C21 58G . . . B 2 -21.181 40.805 -8.344 1 23.86 ? C21 58G 301 A 1 HETATM 9 C C4 58G . . . B 2 -21.09 41.726 -7.332 1 21.71 ? C4 58G 301 A 1 HETATM 10 C C14 58G . . . B 2 -18.115 42.581 -12.818 1 30.44 ? C14 58G 301 A 1 HETATM 11 C C7 58G . . . B 2 -18.988 41.043 -8.883 1 23.72 ? C7 58G 301 A 1 HETATM 12 C C2 58G . . . B 2 -22.255 42.077 -6.514 1 23.68 ? C2 58G 301 A 1 HETATM 13 C C11 58G . . . B 2 -16.642 40.707 -12.531 1 30.12 ? C11 58G 301 A 1 HETATM 14 C C10 58G . . . B 2 -16.73 39.7 -11.419 1 24.97 ? C10 58G 301 A 1 HETATM 15 C C13 58G . . . B 2 -18.935 40.578 -11.771 1 27.84 ? C13 58G 301 A 1 HETATM 16 C C12 58G . . . B 2 -18.045 41.107 -12.862 1 26.26 ? C12 58G 301 A 1 HETATM 17 C C9 58G . . . B 2 -18.063 39.894 -10.752 1 25.37 ? C9 58G 301 A 1 HETATM 18 N N20 58G . . . B 2 -20.158 40.451 -9.123 1 26.36 ? N20 58G 301 A 1 HETATM 19 N N1 58G . . . B 2 -22.09 43.225 -5.797 1 21.03 ? N1 58G 301 A 1 HETATM 20 N N8 58G . . . B 2 -17.837 40.764 -9.626 1 22.34 ? N8 58G 301 A 1 HETATM 21 O O3 58G . . . B 2 -23.252 41.384 -6.515 1 23.07 ? O3 58G 301 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #